Gene omics information

Query gene ID At4g29270
Gene name acid phosphatase class B family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5065.3At4g29270829048acid phosphatase class B family proteinF:acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBOS.X.H.G.
0.8894.0At3g15950820839NAI2Similar to TSK-associating protein 1 (TSA1), contains 10 EFE repeats, a novel repeat sequence unique to plants. Expressed preferentially in the roots.Protein is localized to ER bodies- an endoplasmic reticulum derived structure. Loss of function mutations lack ER bodies.S.X.H.G.
0.8290.9At3g16420820890PBP1 (PYK10-BINDING PROTEIN 1)The PBP1(PYK10-binding protein 1) assists the PYK10 (beta-glucosidase complex) in its activity and may act like a molecular chaperone that facilitates the correct polymerization of PYK10, when tissues are damaged and subcellular structures are destroyed by pests.S.X.H.G.
0.7888.6At3g16390820886NSP3 (NITRILE SPECIFIER PROTEIN 3)Encodes a nitrile-specifier protein NSP3. NSP3 is one out of five (At3g16400/NSP1, At2g33070/NSP2, At3g16390/NSP3, At3g16410/NSP4 and At5g48180/NSP5) A. thaliana epithiospecifier protein (ESP) homologues that promote simple nitrile, but not epithionitrile or thiocyanate formation.S.X.H.G.
0.7888.6At3g16460820894jacalin lectin family proteinF:copper ion binding;P:response to cold;C:cytosol, nucleus, membrane;BOMPFVAS.X.H.G.
0.7586.9At3g09260820082PYK10Encodes beta-glucosidase.The major constituent of ER bodies. One of the most abundant proteins in Arabidopsis seedlings. Exist in an soluble (inactive) and non-soluble (active) form, most probably formed in a polymerization process. Involved in the mutualistic interaction between Arabidopsis and the endophytic fungus Piriformospora indica.S.X.H.G.
0.7486.1At3g20370821582meprin and TRAF homology domain-containing protein / MATH domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:membrane;PMOFS.X.H.G.
0.7184.2At4g27860828899integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:integral to membrane;POMBFS.X.H.G.
0.6781.6At2g22770816807NAI1regulates the development of ER bodies. also involves in response to the endophytic fungus Piriformospora indica.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
75.999.9GSM131574ATGE_99_BGSE5631AtGenExpress: Developmental series (roots)
66.399.8GSM131575ATGE_99_CGSE5631AtGenExpress: Developmental series (roots)
53.599.8GSM131573ATGE_99_AGSE5631AtGenExpress: Developmental series (roots)
45.299.8GSM237281Root control rep 2GSE9311Gene expression in roots and shoots of plants grown on selenate
39.799.8E-MEXP-1304-raw-cel-1530618068
39.199.8GSM131563ATGE_93_CGSE5631AtGenExpress: Developmental series (roots)
39.199.8GSM131569ATGE_95_CGSE5631AtGenExpress: Developmental series (roots)
36.699.7GSM237280Root control rep 1GSE9311Gene expression in roots and shoots of plants grown on selenate
36.699.7GSM131562ATGE_93_BGSE5631AtGenExpress: Developmental series (roots)
36.299.7GSM131568ATGE_95_BGSE5631AtGenExpress: Developmental series (roots)
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.542e-89329At4g29260829047acid phosphatase class B family proteinF:acid phosphatase activity;P:biological_process unknown;C:plasma membrane, vacuole;PBOMC.G.S.X.
0.052e-654At1g04040839325acid phosphatase class B family proteinF:acid phosphatase activity;P:biological_process unknown;C:cell wall, plasma membrane, vacuole, plant-type cell wall;BPOMC.G.S.X.
0.014e-136At3g07780819969OBE1 (OBERON1)Encodes a nuclear PHD finger protein that is functionally redundant with OBE2 and plays an important role in the maintenance and/or establishment of the root and shoot apical meristems.C.G.S.X.
0.022e+034At5g61470836268zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MOPBFVAC.G.S.X.
0.022e+034At2g32150817774haloacid dehalogenase-like hydrolase family proteinF:hydrolase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;OBPFAMC.G.S.X.
0.012e+034At1g48540841275leucine-rich repeat family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MBOFPVC.G.S.X.
0.016e+032At5g67530836889peptidyl-prolyl cis-trans isomerase cyclophilin-type family proteinF:ubiquitin-protein ligase activity, peptidyl-prolyl cis-trans isomerase activity;P:protein folding, protein ubiquitination;C:ubiquitin ligase complex;OBMFPAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.056e-446Glycine maxGma.13245.1.S1_atCD393826--5e-4At5g51260acid phosphatase, putativeC.G.S.X.
0.041e-550Hordeum vulgareContig2436_atContig2436--3e-8At4g29260acid phosphatase class B family proteinC.G.S.X.
0.041e-242Oryza sativaOs06g0139800AK058604.1-Acid phosphatase-1(1) (Fragment)1e-2At4g29270acid phosphatase class B family proteinC.G.S.X.
0.042e+034Populus trichocarpaPtpAffx.25041.1.S1_atCV236081hypothetical protein-2e+0At4g29270acid phosphatase class B family proteinC.G.S.X.
0.046e+032Triticum aestivumTaAffx.100087.1.S1_atCA642157--8e+0At5g41761unknown proteinC.G.S.X.
0.032e+032Vitis vinifera1608312_atCA809526hypothetical protein LOC100262024-5e-18At3g07880Rho GDP-dissociation inhibitor family proteinC.G.S.X.
0.036e-134Zea maysZm.13772.1.S1_atAY105513.1--3e-14At2g47400CP12-1C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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