CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g29270

Gene name acid phosphatase class B family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At4g29270 829048 acid phosphatase class B family protein F:acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBO S.X. H.G.
0.88 94.0 At3g15950 820839 NAI2 Similar to TSK-associating protein 1 (TSA1), contains 10 EFE repeats, a novel repeat sequence unique to plants. Expressed preferentially in the roots.Protein is localized to ER bodies- an endoplasmic reticulum derived structure. Loss of function mutations lack ER bodies. S.X. H.G.
0.82 90.9 At3g16420 820890 PBP1 (PYK10-BINDING PROTEIN 1) The PBP1(PYK10-binding protein 1) assists the PYK10 (beta-glucosidase complex) in its activity and may act like a molecular chaperone that facilitates the correct polymerization of PYK10, when tissues are damaged and subcellular structures are destroyed by pests. S.X. H.G.
0.78 88.6 At3g16390 820886 NSP3 (NITRILE SPECIFIER PROTEIN 3) Encodes a nitrile-specifier protein NSP3. NSP3 is one out of five (At3g16400/NSP1, At2g33070/NSP2, At3g16390/NSP3, At3g16410/NSP4 and At5g48180/NSP5) A. thaliana epithiospecifier protein (ESP) homologues that promote simple nitrile, but not epithionitrile or thiocyanate formation. S.X. H.G.
0.78 88.6 At3g16460 820894 jacalin lectin family protein F:copper ion binding;P:response to cold;C:cytosol, nucleus, membrane;BOMPFVA S.X. H.G.
0.75 86.9 At3g09260 820082 PYK10 Encodes beta-glucosidase.The major constituent of ER bodies. One of the most abundant proteins in Arabidopsis seedlings. Exist in an soluble (inactive) and non-soluble (active) form, most probably formed in a polymerization process. Involved in the mutualistic interaction between Arabidopsis and the endophytic fungus Piriformospora indica. S.X. H.G.
0.74 86.1 At3g20370 821582 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:membrane;PMOF S.X. H.G.
0.71 84.2 At4g27860 828899 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;POMBF S.X. H.G.
0.67 81.6 At2g22770 816807 NAI1 regulates the development of ER bodies. also involves in response to the endophytic fungus Piriformospora indica. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
75.9 99.9 GSM131574 ATGE_99_B GSE5631 AtGenExpress: Developmental series (roots)
66.3 99.8 GSM131575 ATGE_99_C GSE5631 AtGenExpress: Developmental series (roots)
53.5 99.8 GSM131573 ATGE_99_A GSE5631 AtGenExpress: Developmental series (roots)
45.2 99.8 GSM237281 Root control rep 2 GSE9311 Gene expression in roots and shoots of plants grown on selenate
39.7 99.8 E-MEXP-1304-raw-cel-1530618068
39.1 99.8 GSM131563 ATGE_93_C GSE5631 AtGenExpress: Developmental series (roots)
39.1 99.8 GSM131569 ATGE_95_C GSE5631 AtGenExpress: Developmental series (roots)
36.6 99.7 GSM237280 Root control rep 1 GSE9311 Gene expression in roots and shoots of plants grown on selenate
36.6 99.7 GSM131562 ATGE_93_B GSE5631 AtGenExpress: Developmental series (roots)
36.2 99.7 GSM131568 ATGE_95_B GSE5631 AtGenExpress: Developmental series (roots)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.54 2e-89 329 At4g29260 829047 acid phosphatase class B family protein F:acid phosphatase activity;P:biological_process unknown;C:plasma membrane, vacuole;PBOM C.G. S.X.
0.05 2e-6 54 At1g04040 839325 acid phosphatase class B family protein F:acid phosphatase activity;P:biological_process unknown;C:cell wall, plasma membrane, vacuole, plant-type cell wall;BPOM C.G. S.X.
0.01 4e-1 36 At3g07780 819969 OBE1 (OBERON1) Encodes a nuclear PHD finger protein that is functionally redundant with OBE2 and plays an important role in the maintenance and/or establishment of the root and shoot apical meristems. C.G. S.X.
0.02 2e+0 34 At5g61470 836268 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MOPBFVA C.G. S.X.
0.02 2e+0 34 At2g32150 817774 haloacid dehalogenase-like hydrolase family protein F:hydrolase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;OBPFAM C.G. S.X.
0.01 2e+0 34 At1g48540 841275 leucine-rich repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MBOFPV C.G. S.X.
0.01 6e+0 32 At5g67530 836889 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein F:ubiquitin-protein ligase activity, peptidyl-prolyl cis-trans isomerase activity;P:protein folding, protein ubiquitination;C:ubiquitin ligase complex;OBMFPA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 6e-4 46 Glycine max Gma.13245.1.S1_at CD393826 - - 5e-4 At5g51260 acid phosphatase, putative C.G. S.X.
0.04 1e-5 50 Hordeum vulgare Contig2436_at Contig2436 - - 3e-8 At4g29260 acid phosphatase class B family protein C.G. S.X.
0.04 1e-2 42 Oryza sativa Os06g0139800 AK058604.1 - Acid phosphatase-1(1) (Fragment) 1e-2 At4g29270 acid phosphatase class B family protein C.G. S.X.
0.04 2e+0 34 Populus trichocarpa PtpAffx.25041.1.S1_at CV236081 hypothetical protein - 2e+0 At4g29270 acid phosphatase class B family protein C.G. S.X.
0.04 6e+0 32 Triticum aestivum TaAffx.100087.1.S1_at CA642157 - - 8e+0 At5g41761 unknown protein C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1608312_at CA809526 hypothetical protein LOC100262024 - 5e-18 At3g07880 Rho GDP-dissociation inhibitor family protein C.G. S.X.
0.03 6e-1 34 Zea mays Zm.13772.1.S1_at AY105513.1 - - 3e-14 At2g47400 CP12-1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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