Gene omics information

Query gene ID At4g29240
Gene name leucine-rich repeat family protein / extensin family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2930.3At4g29240829045leucine-rich repeat family protein / extensin family proteinF:protein binding;P:biological_process unknown;C:endomembrane system;PMOBFVAS.X.H.G.
0.2930.3At5g50110835075-F:molecular_function unknown;P:cell cycle;C:cellular_component unknown;BOPMS.X.H.G.
0.157.8At1g50000841424methyltransferaseF:methyltransferase activity;P:rRNA processing;C:chloroplast;BOPMS.X.H.G.
0.040.9At1g21570838758zinc finger (CCCH-type) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:unknown;MFPOS.X.H.G.
0.030.6At2g41990818799unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
884.2100.0GSM133755Lindsey_1-7_heart-stage-cotyledon_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
308.8100.0GSM133765Lindsey_1-17_torpedo-cotyledon_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
261.7100.0GSM133774Lindsey_1-26_torpedo-meristem_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
171.4100.0GSM133756Lindsey_1-10_heart-stage-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
160.599.9GSM133767Lindsey_1-19_torpedo-basal_Rep4_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
153.599.9GSM133769Lindsey_1-21_torpedo-basal_Rep6_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
90.999.9GSM311284Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
77.799.9GSM133768Lindsey_1-20_torpedo-basal_Rep5_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
60.899.8GSM133766Lindsey_1-18_torpedo-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
46.999.8GSM133772Lindsey_1-24_torpedo-apical_Rep6_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.652e-170599At2g19780816497leucine-rich repeat family protein / extensin family proteinF:protein binding;P:signal transduction;C:endomembrane system;PMOBFAC.G.S.X.
0.024e-240At4g26540828760kinaseF:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAC.G.S.X.
0.012e-138At5g49290834989protein bindingF:protein binding;P:signal transduction;C:unknown;PMBOFVAC.G.S.X.
0.012e-138At4g40020830163unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVC.G.S.X.
0.012e-138At3g49670824129BAM2 (BARELY ANY MERISTEM 2)Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM1,with more than 85% a.a. identity. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. Anthers of double mutants (bam1bam2) appeared abnormal at a very early stage and lack the endothecium, middle, and tapetum layers. Further analyses revealed that cells interior to the epidermis (in anther tissue) acquire some characteristics of pollen mother cells (PMCs), suggesting defects in cell fate specification. The pollen mother-like cells degenerate before the completion of meiosis, suggesting that these cells are defective. In addition, the BAM2 expression pattern supports both an early role in promoting somatic cell fates and a subsequent function in the PMCs.C.G.S.X.
0.012e-138At2g01950814726BRL2 (BRI1-LIKE 2)Encodes a leucine rich repeat receptor kinase and associated with provascular/procambial cells. Similar to BRI, brassinosteroid receptor protein.C.G.S.X.
0.016e-136At4g28490828967HAE (HAESA)member of Receptor kinase-like protein familyC.G.S.X.
0.026e-136At3g19020821435leucine-rich repeat family protein / extensin family proteinF:structural constituent of cell wall, protein binding;P:unknown;C:endomembrane system;MBOPFVAC.G.S.X.
0.046e-136At3g19320821466leucine-rich repeat family proteinF:protein binding;P:unknown;C:endomembrane system;PMOBFVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.033e+034Glycine maxGmaAffx.62446.1.S1_atBM524557--7e-2At2g19780leucine-rich repeat family protein / extensin family proteinC.G.S.X.
0.023e-136Hordeum vulgareContig15332_atContig15332--6e-12At2g27550ATC (ARABIDOPSIS THALIANA CENTRORADIALIS)C.G.S.X.
0.025e+034Oryza sativaOs11g01134009639.m00125--3e-1At3g60210chloroplast chaperonin 10, putativeC.G.S.X.
0.096e-240Populus trichocarpaPtpAffx.9817.1.A1_atCV245618hypothetical protein-4e-2At4g29240leucine-rich repeat family protein / extensin family proteinC.G.S.X.
0.036e-136Triticum aestivumTaAffx.113618.1.S1_atCA608405--2e+0At5g45550mob1/phocein family proteinC.G.S.X.
0.023e+032Vitis vinifera1612777_atBQ796950hypothetical protein LOC100262144-2e-12At4g30850HHP2 (HEPTAHELICAL TRANSMEMBRANE PROTEIN2)C.G.S.X.
0.021e+034Zea maysZm.18208.1.A1_s_atBM338077hypothetical protein LOC100275571-4e+0At3g45245-C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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