CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g29210

Gene name GGT4 (GAMMA-GLUTAMYL TRANSPEPTIDASE 4)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g29210 829042 GGT4 (GAMMA-GLUTAMYL TRANSPEPTIDASE 4) The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in the vacuole and is most active in roots. The encoded enzyme is involved in the initial degradation of glutathione conjugates in this cell compartment. It is also induced by xenobiotics and contributes to xenobiotics metabolism. S.X. H.G.
0.50 65.3 At1g71190 843459 SAG18 (SENESCENCE ASSOCIATED GENE 18) Senescence associated gene (SAG). Expression induced by ozone. Encodes a plant-specific protein of unknown function. Based on a personal communication from David Meinke (08/21/2007), this gene is not allelic to TTN4, even though this has been stated previously in a publication. S.X. H.G.
0.47 61.2 At2g33630 817929 3-beta hydroxysteroid dehydrogenase/isomerase family protein F:3-beta-hydroxy-delta5-steroid dehydrogenase activity, binding, catalytic activity;P:steroid biosynthetic process, metabolic process;C:endoplasmic reticulum;BOMAFPV S.X. H.G.
0.46 59.8 At4g19670 827711 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFB S.X. H.G.
0.45 58.3 At3g59950 825165 autophagy 4b (APG4b) F:peptidase activity;P:autophagy;C:chloroplast;MOFP S.X. H.G.
0.43 55.3 At1g77420 844079 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:unknown;BOPFMVA S.X. H.G.
0.42 53.9 At2g26230 817163 uricase / urate oxidase / nodulin 35, putative F:urate oxidase activity;P:purine base metabolic process;C:peroxisome;BFMPOA S.X. H.G.
0.42 53.9 At4g05160 825864 4-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putative Encodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At4g05160 preferentially activates fatty acids with medium chain length (C6:0 and C7:0) as well as even-numbered long-chain fatty acids (C14:0, C16:0 and C18:0). At4g05160 was also able to catalyze the conversion of OPC-6:0 to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis. S.X. H.G.
0.40 50.8 At5g12200 831093 dihydropyrimidinase / DHPase / dihydropyrimidine amidohydrolase / hydantoinase (PYD2) F:hydrolase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, dihydropyrimidinase activity;P:unknown;C:endomembrane system;OBMAFP S.X. H.G.
0.40 50.8 At2g26600 817201 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;POF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
24.1 99.6 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
20.8 99.6 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
18.5 99.5 E-ATMX-6-raw-cel-1308219150
17.2 99.5 GSM133030 BC482-2 GSE5684 AtGenExpress: Pathogen Series: Response to Botrytis cinerea infection
17.1 99.5 GSM265411 Arabidopsis, whole roots, -Fe, replicate 1 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
17.1 99.5 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
16.8 99.5 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
16.8 99.5 GSM184490 Epidermis&Cortex root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
16.4 99.5 GSM265412 Arabidopsis, whole roots, -Fe, replicate 2 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
16.3 99.5 GSM184487 Epidermis&Cortex root cells 2hr KCl control treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 6e-5 50 At1g69820 843318 GGT3 (GAMMA-GLUTAMYL TRANSPEPTIDASE 3) F:gamma-glutamyltransferase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPA C.G. S.X.
0.01 4e-3 44 At4g39640 830118 GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1) The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in vascular tissues (predominantly phloem) of leaves and is involved in the degradation of glutathione. The encoded enzyme also mitigates oxidative stress by metabolizing GSSG (oxidized form of GSH - glutathione) in the apoplast. C.G. S.X.
0.02 6e-2 40 At4g01590 828101 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPV C.G. S.X.
0.02 6e-2 40 At3g12955 820481 auxin-responsive protein-related F:molecular_function unknown;P:response to auxin stimulus;C:mitochondrion;P C.G. S.X.
0.01 6e-2 40 At3g50660 824229 DWF4 (DWARF 4) Encodes a 22α hydroxylase whose reaction is a rate-limiting step in brassinosteroid biosynthetic pathway. The protein is a member of CYP90B gene family. CLM is an epi-allele with small, compressed rosette, reduced internode length, and reduced fertility, appears in selfed ddm mutant plants possibly due to loss of cytosine methylation. Transcripts accumulate in actively growing tissues, and GUS expression is negatively regulated by brassinosteroids. Localized in the endoplasmic reticulum. The in vitro expressed protein can perform the C-22 hydroxylation of a variety of C27-, C28- and C29-sterols. Cholesterol was the best substrate, followed by campesterol. Sitosterol was a poor substrate. C.G. S.X.
0.01 2e-1 38 At5g46795 834723 MSP2 (microspore-specific promoter 2) F:molecular_function unknown;P:pollen development;C:chloroplast;MPO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 6e-12 73 Glycine max Gma.7301.1.S1_at BM528250 - - 2e-12 At4g29210 GGT4 (GAMMA-GLUTAMYL TRANSPEPTIDASE 4) C.G. S.X.
0.01 2e+0 34 Hordeum vulgare HO06E11S_at HO06E11S - - 2e-1 At1g72070 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.02 1e-1 40 Oryza sativa Os12g0248300 9640.m01408 - - 7e-2 At4g39260 GR-RBP8 C.G. S.X.
0.10 1e-16 89 Populus trichocarpa Ptp.1311.1.S1_s_at CK093433 - - 5e-17 At4g29210 GGT4 (GAMMA-GLUTAMYL TRANSPEPTIDASE 4) C.G. S.X.
0.02 3e-1 38 Triticum aestivum TaAffx.110626.1.S1_at CA656896 - - 1e-3 At4g08570 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related C.G. S.X.
0.07 3e-10 65 Vitis vinifera 1620515_at CF568869 - - 3e-10 At4g29210 GGT4 (GAMMA-GLUTAMYL TRANSPEPTIDASE 4) C.G. S.X.
0.01 1e-1 38 Zea mays Zm.9423.1.A1_at BM268754 IDP2449 protein - 1e-1 At4g29210 GGT4 (GAMMA-GLUTAMYL TRANSPEPTIDASE 4) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0006751 The chemical reactions and pathways resulting in the breakdown of glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins.
X GO:0006805 The chemical reactions and pathways involving a xenobiotic compound, a compound foreign to living organisms. Used of chemical compounds, e.g. a xenobiotic chemical, such as a pesticide.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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