CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g29060

Gene name emb2726 (embryo defective 2726)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g29060 829027 emb2726 (embryo defective 2726) F:RNA binding, translation elongation factor activity;P:embryonic development ending in seed dormancy, translational elongation, response to cadmium ion;C:chloroplast stroma, chloroplast, chloroplast envelope;BOMFPAV S.X. H.G.
0.86 93.1 At5g55220 835615 trigger factor type chaperone family protein F:peptidyl-prolyl cis-trans isomerase activity;P:protein folding, protein transport;C:chloroplast, chloroplast stroma, chloroplast envelope;BOMPFV S.X. H.G.
0.80 89.8 At1g55490 841996 CPN60B (CHAPERONIN 60 BETA) encodes the beta subunit of the chloroplast chaperonin 60, a homologue of bacterial GroEL. Mutants in this gene develops lesions on its leaves, expresses systemic acquired resistance (SAR) and develops accelerated cell death to heat shock stress. The protein has molecular chaperone activity for suppressing protein aggregation in vitro. S.X. H.G.
0.44 57.2 At1g12800 837836 S1 RNA-binding domain-containing protein F:RNA binding;P:unknown;C:chloroplast;BOMFPAV S.X. H.G.
0.38 46.7 At3g62910 825466 APG3 (ALBINO AND PALE GREEN) Isolated in a screen for chloroplast development mutants. Pale green, albino seedlings arrest early in seedling development. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
11.1 99.2 GSM131473 ATGE_7_C2 GSE5629 AtGenExpress: Developmental series (seedlings and whole plants)
10.9 99.2 GSM131472 ATGE_7_B2 GSE5629 AtGenExpress: Developmental series (seedlings and whole plants)
10.9 99.2 E-TABM-21-raw-cel-529816201
10.3 99.2 GSM131471 ATGE_7_A2 GSE5629 AtGenExpress: Developmental series (seedlings and whole plants)
9.8 99.1 E-TABM-21-raw-cel-529816241
9.7 99.1 E-TABM-21-raw-cel-529816040
9.5 99.1 E-TABM-21-raw-cel-529816362
9.4 99.1 E-TABM-21-raw-cel-529816483
9.2 99.1 E-TABM-21-raw-cel-529816080
9.1 99.1 E-TABM-21-raw-cel-529816403
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 9e-2 40 At4g23440 828443 nucleoside-triphosphatase/ nucleotide binding / transmembrane receptor F:transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding;P:signal transduction, innate immune response;C:plasma membrane;BPFOMA C.G. S.X.
0.01 9e-2 40 At1g68990 843232 DNA-directed RNA polymerase, mitochondrial (RPOMT) F:DNA-directed RNA polymerase activity, DNA binding;P:transcription;C:unknown;OFPMVB C.G. S.X.
0.01 4e-1 38 At5g10940 830961 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:plasma membrane, CUL4 RING ubiquitin ligase complex;MBFOPA C.G. S.X.
0.01 4e-1 38 At5g06340 830522 ATNUDX27 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 27) F:bis(5'-adenosyl)-pentaphosphatase activity, bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity;P:biological_process unknown;C:chloroplast;OBPMA C.G. S.X.
0.01 4e-1 38 At3g06150 819789 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM C.G. S.X.
0.01 4e-1 38 At2g14910 815980 unknown protein F:unknown;P:unknown;C:chloroplast;BOPM C.G. S.X.
0.01 4e-1 38 At2g47360 819349 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 3e-36 155 Glycine max Gma.1666.1.S1_at BG508327 - - 8e-37 At4g29060 emb2726 (embryo defective 2726) C.G. S.X.
0.05 8e-7 56 Hordeum vulgare Contig3659_s_at Contig3659 - - 3e-7 At4g29060 emb2726 (embryo defective 2726) C.G. S.X.
0.12 2e-10 69 Oryza sativa Os12g0541500 AK067367.1 - Elongation factor Ts (EF-Ts) 1e-10 At4g29060 emb2726 (embryo defective 2726) C.G. S.X.
0.35 1e-63 246 Populus trichocarpa PtpAffx.128497.1.S1_at CV277499 hypothetical protein - 4e-64 At4g29060 emb2726 (embryo defective 2726) C.G. S.X.
0.10 2e-9 65 Triticum aestivum Ta.454.1.S1_at BQ171739 - - 7e-10 At4g29060 emb2726 (embryo defective 2726) C.G. S.X.
0.16 1e-35 151 Vitis vinifera 1610546_at CB976033 similar to Os12g0541500 - 1e-35 At4g29060 emb2726 (embryo defective 2726) C.G. S.X.
0.01 6e-1 36 Zea mays Zm.4717.1.A1_at AY107842.1 hypothetical protein LOC100191467 - 7e+0 At3g05746 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0046686 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus.
C GO:0006414 The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis.
N GO:0009793 The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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