Gene omics information

Query gene ID At4g29060
Gene name emb2726 (embryo defective 2726)
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At4g29060829027emb2726 (embryo defective 2726)F:RNA binding, translation elongation factor activity;P:embryonic development ending in seed dormancy, translational elongation, response to cadmium ion;C:chloroplast stroma, chloroplast, chloroplast envelope;BOMFPAVS.X.H.G.
0.8693.1At5g55220835615trigger factor type chaperone family proteinF:peptidyl-prolyl cis-trans isomerase activity;P:protein folding, protein transport;C:chloroplast, chloroplast stroma, chloroplast envelope;BOMPFVS.X.H.G.
0.8089.8At1g55490841996CPN60B (CHAPERONIN 60 BETA)encodes the beta subunit of the chloroplast chaperonin 60, a homologue of bacterial GroEL. Mutants in this gene develops lesions on its leaves, expresses systemic acquired resistance (SAR) and develops accelerated cell death to heat shock stress. The protein has molecular chaperone activity for suppressing protein aggregation in vitro.S.X.H.G.
0.4457.2At1g12800837836S1 RNA-binding domain-containing proteinF:RNA binding;P:unknown;C:chloroplast;BOMFPAVS.X.H.G.
0.3846.7At3g62910825466APG3 (ALBINO AND PALE GREEN)Isolated in a screen for chloroplast development mutants. Pale green, albino seedlings arrest early in seedling development.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
11.199.2GSM131473ATGE_7_C2GSE5629AtGenExpress: Developmental series (seedlings and whole plants)
10.999.2GSM131472ATGE_7_B2GSE5629AtGenExpress: Developmental series (seedlings and whole plants)
10.399.2GSM131471ATGE_7_A2GSE5629AtGenExpress: Developmental series (seedlings and whole plants)
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.019e-240At4g23440828443nucleoside-triphosphatase/ nucleotide binding / transmembrane receptorF:transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding;P:signal transduction, innate immune response;C:plasma membrane;BPFOMAC.G.S.X.
0.019e-240At1g68990843232DNA-directed RNA polymerase, mitochondrial (RPOMT)F:DNA-directed RNA polymerase activity, DNA binding;P:transcription;C:unknown;OFPMVBC.G.S.X.
0.014e-138At5g10940830961transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:plasma membrane, CUL4 RING ubiquitin ligase complex;MBFOPAC.G.S.X.
0.014e-138At5g06340830522ATNUDX27 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 27)F:bis(5'-adenosyl)-pentaphosphatase activity, bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity;P:biological_process unknown;C:chloroplast;OBPMAC.G.S.X.
0.014e-138At3g06150819789unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMC.G.S.X.
0.014e-138At2g14910815980unknown proteinF:unknown;P:unknown;C:chloroplast;BOPMC.G.S.X.
0.014e-138At2g47360819349unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.173e-36155Glycine maxGma.1666.1.S1_atBG508327--8e-37At4g29060emb2726 (embryo defective 2726)C.G.S.X.
0.058e-756Hordeum vulgareContig3659_s_atContig3659--3e-7At4g29060emb2726 (embryo defective 2726)C.G.S.X.
0.122e-1069Oryza sativaOs12g0541500AK067367.1-Elongation factor Ts (EF-Ts)1e-10At4g29060emb2726 (embryo defective 2726)C.G.S.X.
0.351e-63246Populus trichocarpaPtpAffx.128497.1.S1_atCV277499hypothetical protein-4e-64At4g29060emb2726 (embryo defective 2726)C.G.S.X.
0.102e-965Triticum aestivumTa.454.1.S1_atBQ171739--7e-10At4g29060emb2726 (embryo defective 2726)C.G.S.X.
0.161e-35151Vitis vinifera1610546_atCB976033similar to Os12g0541500-1e-35At4g29060emb2726 (embryo defective 2726)C.G.S.X.
0.016e-136Zea maysZm.4717.1.A1_atAY107842.1hypothetical protein LOC100191467-7e+0At3g05746unknown proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0046686A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus.
CGO:0006414The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis.
NGO:0009793The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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