CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g29050

Gene name lectin protein kinase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g29050 829026 lectin protein kinase family protein F:carbohydrate binding, kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.57 73.8 At5g39020 833894 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.22 17.5 At4g38550 830012 - F:unknown;P:unknown;C:chloroplast;MFPOBVA S.X. H.G.
0.17 10.2 At2g20960 816630 pEARLI4 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOBPVA S.X. H.G.
0.13 5.8 At1g13210 837881 ACA.l (autoinhibited Ca2+/ATPase II) F:calmodulin binding, ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism;P:metabolic process, phospholipid transport, ATP biosynthetic process;C:plasma membrane;MBOFPA S.X. H.G.
0.07 1.9 At5g40170 834015 AtRLP54 (Receptor Like Protein 54) F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
93.7 99.9 E-NASC-76-raw-cel-1359879132
75.6 99.9 E-NASC-76-raw-cel-1359878951
72.6 99.9 GSM39213 RRE2_Chitin3 GSE2169 rre1 and rre2 mutants
64.0 99.8 GSM39212 RRE2_Chitin2 GSE2169 rre1 and rre2 mutants
62.3 99.8 E-NASC-76-raw-cel-1359879106
59.2 99.8 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
53.9 99.8 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
51.4 99.8 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
51.3 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
51.1 99.8 GSM39195 RRE1_Chitin1 GSE2169 rre1 and rre2 mutants
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.44 1e-126 454 At1g70110 843347 lectin protein kinase family protein F:carbohydrate binding, kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.34 9e-103 375 At1g70130 843349 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.09 3e-16 87 At3g59750 825144 receptor lectin kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.11 3e-16 87 At3g59700 825139 ATHLECRK (ARABIDOPSIS THALIANA LECTIN-RECEPTOR KINASE) member of Receptor kinase-like protein family C.G. S.X.
0.08 2e-14 81 At3g59740 825143 receptor lectin kinase 3 (lecRK3) F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.13 2e-14 81 At3g59730 825142 receptor lectin kinase, putative F:carbohydrate binding, kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.05 3e-13 77 At4g02420 828035 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.14 4e-9 63 At2g43690 818971 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.03 3e-7 57 At3g53810 824548 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 9e-2 40 Glycine max Gma.12177.3.A1_at BG157504 - - 6e-9 At3g09100 mRNA capping enzyme family protein C.G. S.X.
0.01 5e-1 36 Hordeum vulgare Contig5785_at Contig5785 - - 2e-5 At1g29370 kinase-related C.G. S.X.
0.03 3e-5 52 Oryza sativa Os07g0130600 AK068045.1 - Protein kinase family protein 9e-5 At4g02410 lectin protein kinase family protein C.G. S.X.
0.05 2e-5 52 Populus trichocarpa PtpAffx.224331.1.S1_at pmrna42781 hypothetical protein - 2e-5 At4g29050 lectin protein kinase family protein C.G. S.X.
0.06 1e-3 46 Triticum aestivum TaAffx.53552.1.S1_at CA691231 - - 2e-4 At4g29050 lectin protein kinase family protein C.G. S.X.
0.03 8e-8 57 Vitis vinifera 1612640_at AY427142.1 - - 2e-8 At2g37710 RLK (receptor lectin kinase) C.G. S.X.
0.01 2e+0 34 Zea mays Zm.3648.1.A1_at AI737218 - - 1e-4 At5g66030 ATGRIP C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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