Gene omics information

Query gene ID At4g29000
Gene name tesmin/TSO1-like CXC domain-containing protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7184.2At4g29000829021tesmin/TSO1-like CXC domain-containing proteinF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;OMPFS.X.H.G.
0.6075.7At5g15570831410-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOS.X.H.G.
0.5065.3At4g08940826472ubiquitin thiolesteraseF:ubiquitin thiolesterase activity;P:response to oxidative stress;C:intracellular;PS.X.H.G.
0.4355.3At1g03560839458pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBAS.X.H.G.
0.2830.3At4g25520828657SLK1 (SEUSS-LIKE 1)F:transcription regulator activity;P:unknown;C:unknown;OMFPBVS.X.H.G.
0.2115.8At1g64570842765-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
410.2100.0GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
300.6100.0GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
91.799.9GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
90.699.9GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.426e-147521At2g20110816530tesmin/TSO1-like CXC domain-containing proteinF:transcription factor activity;P:unknown;C:cellular_component unknown;OMPFBVC.G.S.X.
0.104e-1273At5g25790832648transcription factorF:transcription factor activity;P:unknown;C:cellular_component unknown;OMPBC.G.S.X.
0.011e-346At1g43850840981SEU (seuss)Encodes a transcriptional co-regulator of AGAMOUS, that functions with LEUNIG to repress AG in the outer floral whorls.C.G.S.X.
0.021e-242At5g66350836767SHI (SHORT INTERNODES)A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Shi mutant is dominant, has dwarf phenotype. Loss of function mutations have no observable phenotype. Putative zinc finger protein. Involved in the response to gibberellic acid.C.G.S.X.
0.026e-240At3g26790822293FUS3 (FUSCA 3)Transcriptional factor with high similarity to the B3 region of the VP1/ABI3-like proteins. Full length FUS3 protein binds to the highly conserved RY motif [DNA motif CATGCA(TG)], present in many seed-specific promoters, and the B3 domains of this transcription factor is necessary for the specific interaction with the RY element. Transcriptional activity of FUS3 requires the B3 DNA-binding domain and an activation domain. FUS3 specifies cotyledon identity. Regulator of gene expression during late embryogenesis. Involved in the control foliar organ identity in Arabidopsis by regulating the synthesis of two hormones, abscisic acid and gibberellin. FUS3 together with LEC1 positively regulate the abundance of the ABI3 protein in the seed.C.G.S.X.
0.012e-138At4g34260829575FUC95AF:1,2-alpha-L-fucosidase activity;P:biological_process unknown;C:endomembrane system;BFOPC.G.S.X.
0.012e-138At3g19130821447ATRBP47B (RNA-binding protein 47B)F:RNA binding;P:unknown;C:unknown;MOPFBAVC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.253e-32141Glycine maxGmaAffx.74995.1.S1_atBM086265--1e-32At4g29000tesmin/TSO1-like CXC domain-containing proteinC.G.S.X.
0.023e-240Hordeum vulgareHVSMEm0021J24r2_s_atHVSMEm0021J24r2--5e+0At5g64820unknown proteinC.G.S.X.
0.108e-1273Oryza sativaOs.26583.1.A1_at---0C.G.S.X.
0.222e-24115Populus trichocarpaPtpAffx.216985.1.S1_atpmrna32077hypothetical protein-1e-24At4g29000tesmin/TSO1-like CXC domain-containing proteinC.G.S.X.
0.095e-27123Triticum aestivumTaAffx.9387.1.S1_atBJ216452--2e-8At5g25790transcription factorC.G.S.X.
0.023e-136Vitis vinifera1612008_atCF604996hypothetical protein LOC100243222-1e+0At4g08790nitrilase, putativeC.G.S.X.
0.023e-240Zea maysZm.19317.1.S1_atCO521190tesmin/TSO1-like CXC domain containing protein-5e-2At4g29000tesmin/TSO1-like CXC domain-containing proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
SGO:0045449Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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