CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g28940

Gene name catalytic

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.58 73.8 At4g28940 829015 catalytic F:catalytic activity;P:nucleoside metabolic process;C:endomembrane system;BPO S.X. H.G.
0.90 95.1 At4g20390 827787 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.90 95.1 At5g37690 833748 GDSL-motif lipase/hydrolase family protein F:lipase activity, hydrolase activity, acting on ester bonds;P:lipid metabolic process;C:endomembrane system;PBFOM S.X. H.G.
0.89 94.6 At5g58860 836003 CYP86A1 (CYTOCHROME P450 86 A1) Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly only in root tissue. S.X. H.G.
0.85 92.4 At1g78990 844239 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB S.X. H.G.
0.84 91.9 At5g44550 834482 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.83 91.4 At2g23540 816886 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM S.X. H.G.
0.79 89.1 At2g35380 818105 peroxidase 20 (PER20) (P20) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB S.X. H.G.
0.78 88.6 At3g06390 819813 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.74 86.1 At2g48130 819425 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to membrane;PBOM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
196.4 100.0 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
134.9 99.9 GSM226542 L12SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
109.2 99.9 GSM142670 SF002_ATH1_A8-Fille-ANGR4-12+dex GSE6155 Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.
96.5 99.9 GSM142669 SF002_ATH1_A7-Fille-ANGR4-12nodex GSE6155 Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.
92.2 99.9 GSM290757 root - 01% oxygen - 30min - F GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
83.1 99.9 GSM142674 SF002_ATH1_A5-Fille-WTnodex GSE6155 Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.
76.6 99.9 GSM290825 root - 04% oxygen - 30min - F GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
65.1 99.8 GSM291113 root - 21% oxygen - 30min - F GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
64.2 99.8 GSM142673 SF001_ATH1_A3-Fille-ANGR4-12 GSE6155 Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.
58.9 99.8 GSM142671 SF001_ATH1_A1-Fille-WT-nodex GSE6155 Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 5e-1 36 At3g57300 824897 INO80 (INO80 ORTHOLOG) Encodes the Arabidopsis INO80 ortholog of the SWI/SNF ATPase family. Functions as a positive regulator of DNA homologous recombination (HR). In INO80 mutants, the HR frequency is reduced to 15% of that in the wild-type. Mutation in INO80 does not affect sensitivity to genotoxic agents and efficiency of T-DNA integration. INO80 was also shown to regulate a subset of the Arabidopsis transcriptome. C.G. S.X.
0.01 5e-1 36 At3g26720 822284 glycosyl hydrolase family 38 protein F:in 6 functions;P:mannose metabolic process, carbohydrate metabolic process;C:plasma membrane, vacuole, plant-type cell wall;MOPBFA C.G. S.X.
0.01 2e+0 34 At5g02990 831714 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPOBVFA C.G. S.X.
0.02 2e+0 34 At3g26710 822283 CCB1 (COFACTOR ASSEMBLY OF COMPLEX C) F:molecular_function unknown;P:cytochrome b6f complex assembly;C:chloroplast;OBP C.G. S.X.
0.02 2e+0 34 At2g29960 817546 CYP5 (CYCLOPHILIN 5) encodes a cyclophilin protein that exhibits peptidylprolyl cis/trans-isomerase and protein refolding activities that were sensitive to cyclosporin A. The protein interacts with GNOM in vitro and is localized to both the cytosolic and membrane fractions. The gene is expressed in the developing embryo. C.G. S.X.
0.02 8e+0 32 At5g28390 832924 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPOFB C.G. S.X.
0.01 8e+0 32 At5g59670 836088 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 8e-10 65 Glycine max GmaAffx.42371.1.S1_at BQ785921 - - 3e-10 At4g28940 catalytic C.G. S.X.
0.02 1e+0 34 Hordeum vulgare Contig6075_at Contig6075 - - 3e+0 At4g28940 catalytic C.G. S.X.
0.07 3e-7 57 Oryza sativa Os01g0229800 NM_188605.1 - Purine and other phosphorylases, family 1 protein 1e-7 At4g28940 catalytic C.G. S.X.
0.09 3e-9 63 Populus trichocarpa PtpAffx.13469.1.S1_at CX658940 - - 3e-9 At4g28940 catalytic C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.32265.1.S1_at CA597903 - - 8e-1 At1g12340 - C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1607649_at CB971586 - - 4e-1 At2g37570 SLT1 (sodium- and lithium-tolerant 1) C.G. S.X.
0.02 4e+0 32 Zea mays Zm.15899.3.A1_at AW172030 early nodulin 93 - 9e-1 At1g31760 SWIB complex BAF60b domain-containing protein C.G. S.X.
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Biological processes

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ECC GO ID Process Name
L GO:0009116 The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine).
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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