Gene omics information

Query gene ID At4g28940
Gene name catalytic
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5873.8At4g28940829015catalyticF:catalytic activity;P:nucleoside metabolic process;C:endomembrane system;BPOS.X.H.G.
0.9095.1At4g20390827787integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PS.X.H.G.
0.9095.1At5g37690833748GDSL-motif lipase/hydrolase family proteinF:lipase activity, hydrolase activity, acting on ester bonds;P:lipid metabolic process;C:endomembrane system;PBFOMS.X.H.G.
0.8994.6At5g58860836003CYP86A1 (CYTOCHROME P450 86 A1)Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly only in root tissue.S.X.H.G.
0.8592.4At1g78990844239transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFBS.X.H.G.
0.8491.9At5g44550834482integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.8391.4At2g23540816886GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMS.X.H.G.
0.7989.1At2g35380818105peroxidase 20 (PER20) (P20)F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBS.X.H.G.
0.7888.6At3g06390819813integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.7486.1At2g48130819425protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:anchored to membrane;PBOMS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
196.4100.0GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
134.999.9GSM226542L12SBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
109.299.9GSM142670SF002_ATH1_A8-Fille-ANGR4-12+dexGSE6155Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.
96.599.9GSM142669SF002_ATH1_A7-Fille-ANGR4-12nodexGSE6155Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.
92.299.9GSM290757root - 01% oxygen - 30min - FGSE11558transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
83.199.9GSM142674SF002_ATH1_A5-Fille-WTnodexGSE6155Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.
76.699.9GSM290825root - 04% oxygen - 30min - FGSE11558transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
65.199.8GSM291113root - 21% oxygen - 30min - FGSE11558transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
64.299.8GSM142673SF001_ATH1_A3-Fille-ANGR4-12GSE6155Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.
58.999.8GSM142671SF001_ATH1_A1-Fille-WT-nodexGSE6155Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.015e-136At3g57300824897INO80 (INO80 ORTHOLOG)Encodes the Arabidopsis INO80 ortholog of the SWI/SNF ATPase family. Functions as a positive regulator of DNA homologous recombination (HR). In INO80 mutants, the HR frequency is reduced to 15% of that in the wild-type. Mutation in INO80 does not affect sensitivity to genotoxic agents and efficiency of T-DNA integration. INO80 was also shown to regulate a subset of the Arabidopsis transcriptome.C.G.S.X.
0.015e-136At3g26720822284glycosyl hydrolase family 38 proteinF:in 6 functions;P:mannose metabolic process, carbohydrate metabolic process;C:plasma membrane, vacuole, plant-type cell wall;MOPBFAC.G.S.X.
0.012e+034At5g02990831714kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPOBVFAC.G.S.X.
0.022e+034At3g26710822283CCB1 (COFACTOR ASSEMBLY OF COMPLEX C)F:molecular_function unknown;P:cytochrome b6f complex assembly;C:chloroplast;OBPC.G.S.X.
0.022e+034At2g29960817546CYP5 (CYCLOPHILIN 5)encodes a cyclophilin protein that exhibits peptidylprolyl cis/trans-isomerase and protein refolding activities that were sensitive to cyclosporin A. The protein interacts with GNOM in vitro and is localized to both the cytosolic and membrane fractions. The gene is expressed in the developing embryo.C.G.S.X.
0.028e+032At5g28390832924RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPOFBC.G.S.X.
0.018e+032At5g59670836088leucine-rich repeat protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.138e-1065Glycine maxGmaAffx.42371.1.S1_atBQ785921--3e-10At4g28940catalyticC.G.S.X.
0.021e+034Hordeum vulgareContig6075_atContig6075--3e+0At4g28940catalyticC.G.S.X.
0.073e-757Oryza sativaOs01g0229800NM_188605.1-Purine and other phosphorylases, family 1 protein1e-7At4g28940catalyticC.G.S.X.
0.093e-963Populus trichocarpaPtpAffx.13469.1.S1_atCX658940--3e-9At4g28940catalyticC.G.S.X.
0.032e+034Triticum aestivumTaAffx.32265.1.S1_atCA597903--8e-1At1g12340-C.G.S.X.
0.032e+032Vitis vinifera1607649_atCB971586--4e-1At2g37570SLT1 (sodium- and lithium-tolerant 1)C.G.S.X.
0.024e+032Zea maysZm.15899.3.A1_atAW172030early nodulin 93-9e-1At1g31760SWIB complex BAF60b domain-containing proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0009116The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine).
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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