Gene omics information

Query gene ID At4g28890
Gene name protein binding / ubiquitin-protein ligase/ zinc ion binding
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.1811.4At4g28890829010protein binding / ubiquitin-protein ligase/ zinc ion bindingF:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVBS.X.H.G.
0.4457.2At1g13300837890myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POVBMFS.X.H.G.
0.3338.1At2g21045816639-F:unknown;P:aging;C:unknown;BOPAFMS.X.H.G.
0.3338.1At4g25090828612respiratory burst oxidase, putative / NADPH oxidase, putativeF:in 7 functions;P:oxidation reduction;C:cytosolic ribosome, vacuole;MFPBOAS.X.H.G.
0.2930.3At5g05400830422disease resistance protein (CC-NBS-LRR class), putativeF:protein binding, ATP binding;P:N-terminal protein myristoylation, defense response, apoptosis;C:chloroplast;PMBOFAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
583.7100.0GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
54.799.8GSM184900Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
40.899.8GSM157323Hammond_3-16_Control-root_Rep3_ATH1GSE6825Differential gene expression patterns in potassium-starved and Caesium-treated plants
40.699.8GSM265431Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
34.899.7E-MEXP-828-raw-cel-1156922296
32.699.7GSM260883Yap_A2-AMF_Rep2GSE10323Testing Arabidopsis for the presence of arbuscular mycorrhizal signalling pathways
31.099.7GSM142750MJ001_ATH1_A1-jones-WT1GSE6165The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
31.099.7GSM142755MJ001_ATH1_A6-jones-RH-Rep3GSE6165The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
29.599.7GSM265433Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
29.199.7GSM179976Arabidopsis ein2 mutant roots, mock treatment, replica 2GSE7432Ethylene and auxin interactions in the roots of Arabidopsis seedlings
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.332e-41171At2g20030816522zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVBC.G.S.X.
0.024e-240At4g20190827765unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPBFVC.G.S.X.
0.024e-240At4g19170827655NCED4 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 4)chloroplast-targeted member of a family of enzymes similar to nine-cis-epoxycarotenoid dioxygenaseC.G.S.X.
0.044e-240At2g34000817961zinc finger protein-relatedF:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVC.G.S.X.
0.022e-138At5g65165836640SDH2-3One of three isoforms of the iron-sulfur component of the succinate dehydrogenase complex, a component of the mitochondrial respiratory chain complex II. The product of the nuclear encoded gene is imported into the mitochondrion. Transcripts appear during seed maturation, persist through dessication, are abundant in dry seeds, and markedly decline during germination.C.G.S.X.
0.022e-138At5g27690832831heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:unknown;PMOFBVC.G.S.X.
0.012e-138At5g40520834050unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVAC.G.S.X.
0.012e-138At2g23510816883SDT (SPERMIDINE DISINAPOYL ACYLTRANSFERASE)F:spermidine:sinapoyl CoA N-acyltransferase activity, sinapoyl spermidine:sinapoyl CoA N-acyltransferase activity, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFOC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.076e-550Glycine maxGmaAffx.55953.1.S1_atBQ629142--1e-5At4g28890protein binding / ubiquitin-protein ligase/ zinc ion bindingC.G.S.X.
0.028e-238Hordeum vulgareContig23305_atContig23305--1e-1At4g28890protein binding / ubiquitin-protein ligase/ zinc ion bindingC.G.S.X.
0.021e+036Oryza sativaOs01g06202009629.m04161--3e-1At3g43280unknown proteinC.G.S.X.
0.022e-138Populus trichocarpaPtpAffx.46918.1.S1_atCV238003hypothetical protein-8e-2At1g17490unknown proteinC.G.S.X.
0.023e+034Triticum aestivumTaAffx.104877.1.S1_atCA743645--7e-2At3g12510unknown proteinC.G.S.X.
0.032e-136Vitis vinifera1619645_atCF202342.1--2e-1At2g35850unknown proteinC.G.S.X.
0.021e+034Zea maysZm.12147.1.A1_atBM379748RALFL33-2e-1At1g60870MEE9 (maternal effect embryo arrest 9)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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