CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g28780

Gene name GDSL-motif lipase/hydrolase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g28780 828999 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM S.X. H.G.
0.66 80.1 At5g11450 831016 oxygen-evolving complex-related F:calcium ion binding;P:photosynthesis;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;PB S.X. H.G.
0.63 78.1 At3g60370 825208 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein Encodes an immunophilin, FKBP20-2, that belongs to the FK-506 binding protein (FKBP) subfamily functioning as peptidyl-prolyl isomerases (PPIases) in protein folding. FKBP20-2 has a unique pair of cysteines at the C terminus and was found to be reduced by thioredoxin (Trx) (itself reduced by NADPH by means of NADP-Trx reductase). The FKBP20-2 protein, which contains only two of the five amino acids required for catalysis, showed a low level of PPIase activity that was unaffected on reduction by Trx. Genetic disruption of the FKBP20-2 gene provide evidence that FKBP20-2 participates specifically in the accumulation of the PSII supercomplex in the chloroplast thylakoid lumen by means of a mechanism that has yet to be determined. S.X. H.G.
0.62 77.3 At4g26370 828743 antitermination NusB domain-containing protein F:RNA binding;P:regulation of transcription, DNA-dependent;C:chloroplast;BOP S.X. H.G.
0.62 77.3 At5g45930 834633 CHLI2 (MAGNESIUM CHELATASE I2) encodes a second Chl I gene (CHLI2), a subunit of magnesium chelatase which is required for chlorophyll biosynthesis. Has ATPase activity, regulated by TRX-f. Involved in the assembly of the Mg chelatase complex. S.X. H.G.
0.61 76.7 At2g44650 819073 CHL-CPN10 (CHLOROPLAST CHAPERONIN 10) Encodes a chloroplast-localized chaperonin 10 whose mRNA is expressed in leaves and stems but not roots. S.X. H.G.
0.61 76.7 At2g33180 817879 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma;PBO S.X. H.G.
0.61 76.7 At5g58250 835937 unknown protein F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast;OBP S.X. H.G.
0.60 75.7 At3g12930 820478 - F:unknown;P:biological_process unknown;C:chloroplast;BOPM S.X. H.G.
0.59 74.7 At3g25480 822132 rhodanese-like domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
53.9 99.8 E-MEXP-1451-raw-cel-1585200170
51.6 99.8 E-MEXP-1451-raw-cel-1585200234
39.4 99.8 E-MEXP-1451-raw-cel-1585200202
37.9 99.8 GSM128731 Hennig_1-3_siliques-CK_021114_3_A_Rep1_ATH1 GSE5526 Transcriptional Programs of Early Reproductive Stages in Arabidopsis
28.4 99.7 E-MEXP-1451-raw-cel-1585200266
23.4 99.6 GSM131755 Quick_A28_1-2hr_Rep2_ATH1 GSE5636 Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 1: Ambient CO2 and Ambient Light)
22.9 99.6 E-ATMX-33-raw-cel-1562596103
22.7 99.6 GSM131749 Quick_A2_1-2hr_Rep1_ATH1 GSE5636 Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 1: Ambient CO2 and Ambient Light)
21.9 99.6 GSM131762 Quick_A58_1-4hr-Rep3_ATH1 GSE5636 Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 1: Ambient CO2 and Ambient Light)
20.6 99.6 E-MEXP-1299-raw-cel-1519902620
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.12 4e-14 79 At5g18430 831961 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM C.G. S.X.
0.09 4e-5 50 At5g33370 833315 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM C.G. S.X.
0.18 6e-4 46 At3g04290 819584 LTL1 (LI-TOLERANT LIPASE 1) F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM C.G. S.X.
0.02 4e-2 40 At1g28580 839758 GDSL-motif lipase, putative F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:vacuole;PBOFM C.G. S.X.
0.02 1e-1 38 At4g18970 827632 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM C.G. S.X.
0.02 5e-1 36 At2g06570 815216 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 2e+0 34 At5g08460 830745 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 1e-2 42 Glycine max Gma.10073.2.S1_at BE473392 - - 5e-3 At4g28780 GDSL-motif lipase/hydrolase family protein C.G. S.X.
0.10 7e-5 48 Hordeum vulgare Contig3996_at Contig3996 - - 2e-4 At4g28780 GDSL-motif lipase/hydrolase family protein C.G. S.X.
0.09 2e-5 52 Oryza sativa Os10g0463200 AK108201.1 - Lipolytic enzyme, G-D-S-L family protein 1e-5 At4g28780 GDSL-motif lipase/hydrolase family protein C.G. S.X.
0.16 9e-19 95 Populus trichocarpa PtpAffx.104760.1.S1_at AJ773942 hypothetical protein - 7e-19 At4g28780 GDSL-motif lipase/hydrolase family protein C.G. S.X.
0.08 2e-4 48 Triticum aestivum TaAffx.114177.2.S1_at CA593656 - - 7e-5 At4g28780 GDSL-motif lipase/hydrolase family protein C.G. S.X.
0.15 2e-13 75 Vitis vinifera 1607785_at CF607746 hypothetical protein LOC100260283 - 3e-7 At3g04290 LTL1 (LI-TOLERANT LIPASE 1) C.G. S.X.
0.07 1e-3 44 Zea mays Zm.17169.1.S1_at CO532055 hypothetical protein LOC100280267 - 3e-3 At4g28780 GDSL-motif lipase/hydrolase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006629 The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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