Gene omics information

Query gene ID At4g28780
Gene name GDSL-motif lipase/hydrolase family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At4g28780828999GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMS.X.H.G.
0.6680.1At5g11450831016oxygen-evolving complex-relatedF:calcium ion binding;P:photosynthesis;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;PBS.X.H.G.
0.6378.1At3g60370825208immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family proteinEncodes an immunophilin, FKBP20-2, that belongs to the FK-506 binding protein (FKBP) subfamily functioning as peptidyl-prolyl isomerases (PPIases) in protein folding. FKBP20-2 has a unique pair of cysteines at the C terminus and was found to be reduced by thioredoxin (Trx) (itself reduced by NADPH by means of NADP-Trx reductase). The FKBP20-2 protein, which contains only two of the five amino acids required for catalysis, showed a low level of PPIase activity that was unaffected on reduction by Trx. Genetic disruption of the FKBP20-2 gene provide evidence that FKBP20-2 participates specifically in the accumulation of the PSII supercomplex in the chloroplast thylakoid lumen by means of a mechanism that has yet to be determined.S.X.H.G.
0.6277.3At4g26370828743antitermination NusB domain-containing proteinF:RNA binding;P:regulation of transcription, DNA-dependent;C:chloroplast;BOPS.X.H.G.
0.6277.3At5g45930834633CHLI2 (MAGNESIUM CHELATASE I2)encodes a second Chl I gene (CHLI2), a subunit of magnesium chelatase which is required for chlorophyll biosynthesis. Has ATPase activity, regulated by TRX-f. Involved in the assembly of the Mg chelatase complex.S.X.H.G.
0.6176.7At2g44650819073CHL-CPN10 (CHLOROPLAST CHAPERONIN 10)Encodes a chloroplast-localized chaperonin 10 whose mRNA is expressed in leaves and stems but not roots.S.X.H.G.
0.6176.7At2g33180817879unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma;PBOS.X.H.G.
0.6176.7At5g58250835937unknown proteinF:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast;OBPS.X.H.G.
0.6075.7At3g12930820478-F:unknown;P:biological_process unknown;C:chloroplast;BOPMS.X.H.G.
0.5974.7At3g25480822132rhodanese-like domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;PS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
53.999.8E-MEXP-1451-raw-cel-1585200170
51.699.8E-MEXP-1451-raw-cel-1585200234
39.499.8E-MEXP-1451-raw-cel-1585200202
37.999.8GSM128731Hennig_1-3_siliques-CK_021114_3_A_Rep1_ATH1GSE5526Transcriptional Programs of Early Reproductive Stages in Arabidopsis
28.499.7E-MEXP-1451-raw-cel-1585200266
23.499.6GSM131755Quick_A28_1-2hr_Rep2_ATH1GSE5636Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 1: Ambient CO2 and Ambient Light)
22.999.6E-ATMX-33-raw-cel-1562596103
22.799.6GSM131749Quick_A2_1-2hr_Rep1_ATH1GSE5636Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 1: Ambient CO2 and Ambient Light)
21.999.6GSM131762Quick_A58_1-4hr-Rep3_ATH1GSE5636Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 1: Ambient CO2 and Ambient Light)
20.699.6E-MEXP-1299-raw-cel-1519902620
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.124e-1479At5g18430831961GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMC.G.S.X.
0.094e-550At5g33370833315GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMC.G.S.X.
0.186e-446At3g04290819584LTL1 (LI-TOLERANT LIPASE 1)F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMC.G.S.X.
0.024e-240At1g28580839758GDSL-motif lipase, putativeF:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:vacuole;PBOFMC.G.S.X.
0.021e-138At4g18970827632GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMC.G.S.X.
0.025e-136At2g06570815216unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.022e+034At5g08460830745GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.181e-242Glycine maxGma.10073.2.S1_atBE473392--5e-3At4g28780GDSL-motif lipase/hydrolase family proteinC.G.S.X.
0.107e-548Hordeum vulgareContig3996_atContig3996--2e-4At4g28780GDSL-motif lipase/hydrolase family proteinC.G.S.X.
0.092e-552Oryza sativaOs10g0463200AK108201.1-Lipolytic enzyme, G-D-S-L family protein1e-5At4g28780GDSL-motif lipase/hydrolase family proteinC.G.S.X.
0.169e-1995Populus trichocarpaPtpAffx.104760.1.S1_atAJ773942hypothetical protein-7e-19At4g28780GDSL-motif lipase/hydrolase family proteinC.G.S.X.
0.082e-448Triticum aestivumTaAffx.114177.2.S1_atCA593656--7e-5At4g28780GDSL-motif lipase/hydrolase family proteinC.G.S.X.
0.152e-1375Vitis vinifera1607785_atCF607746hypothetical protein LOC100260283-3e-7At3g04290LTL1 (LI-TOLERANT LIPASE 1)C.G.S.X.
0.071e-344Zea maysZm.17169.1.S1_atCO532055hypothetical protein LOC100280267-3e-3At4g28780GDSL-motif lipase/hydrolase family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0006629The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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