Gene omics information

Query gene ID At4g28650
Gene name leucine-rich repeat transmembrane protein kinase, putative
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6378.1At4g28650828983leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVAS.X.H.G.
0.8089.8At3g50640824227unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PS.X.H.G.
0.6075.7At2g24300816966calmodulin-binding proteinF:calmodulin binding;P:biological_process unknown;C:unknown;PBS.X.H.G.
0.6075.7At5g19340832054unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMFBVS.X.H.G.
0.5065.3At3g01220821232ATHB20 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20)Encodes a homeodomain leucine zipper class I (HD-Zip I) protein, its expression is auxin-inducible and dependent on MP gene activity.S.X.H.G.
0.5065.3At3g20130821556CYP705A22member of CYP705AS.X.H.G.
0.5065.3At5g14150831265unknown proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PBOS.X.H.G.
0.4355.3At2g24610816997ATCNGC14member of Cyclic nucleotide gated channel familyS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
138.199.9GSM265429Arabidopsis, root, longitudinal zone 2, -Fe conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
108.699.9GSM252691Section of Root from 270 mm to 340 mm harvested immediately rep2GSE9996Organ regeneration in plants is independent of stem cell niche activity
103.599.9GSM184895Arabidopsis, root cells, cortex, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
87.399.9GSM252692Section of Root from 270 mm to 340 mm harvested immediately rep3GSE9996Organ regeneration in plants is independent of stem cell niche activity
81.999.9GSM265428Arabidopsis, root, longitudinal zone 2, -Fe conditions, rep 1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
73.799.9GSM252690Section of Root from 270 mm to 340 mm harvested immediately rep1GSE9996Organ regeneration in plants is independent of stem cell niche activity
71.599.9GSM265421Arabidopsis, root, longitudinal zone 2, standard conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
63.799.8GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
61.399.8GSM265420Arabidopsis, root, longitudinal zone 2, standard conditions, rep 1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
59.999.8GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.063e-552At1g08590837381CLAVATA1 receptor kinase (CLV1)similar to CLV1-like leucine rich repeat transmembrane receptor-like protein kinase (Ipomoea nil) (U77888)C.G.S.X.
0.024e-448At3g24240822011leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAC.G.S.X.
0.024e-448At2g33170817878leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAC.G.S.X.
0.022e-346At5g59700836091protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAC.G.S.X.
0.042e-346At5g61480836269leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAC.G.S.X.
0.012e-346At1g72180843550leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAC.G.S.X.
0.013e-242At4g23160828415protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOFBVAC.G.S.X.
0.011e-140At4g20270827774BAM3 (BARELY ANY MERISTEM 3)Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function.C.G.S.X.
0.011e-140At3g17410821005serine/threonine protein kinase, putativeF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOBFVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e+036Glycine maxGmaAffx.87354.1.S1_atBM526350--2e-15At1g34110leucine-rich repeat transmembrane protein kinase, putativeC.G.S.X.
0.027e-136Hordeum vulgareContig13701_atContig13701--3e-12At3g49670BAM2 (BARELY ANY MERISTEM 2)C.G.S.X.
0.038e-757Oryza sativaOs02g0111800AK111191.1-Protein kinase domain containing protein7e-3At1g08590CLAVATA1 receptor kinase (CLV1)C.G.S.X.
0.141e-20103Populus trichocarpaPtpAffx.202726.1.S1_atpmrna5448hypothetical protein-8e-21At4g28650leucine-rich repeat transmembrane protein kinase, putativeC.G.S.X.
0.022e+036Triticum aestivumTa.3983.1.S1_atCK202188--4e-11At3g49670BAM2 (BARELY ANY MERISTEM 2)C.G.S.X.
0.015e-136Vitis vinifera1619732_atCF517983hypothetical protein LOC100267623-5e-15At5g53000TAP46 (2A phosphatase associated protein of 46 kD)C.G.S.X.
0.034e-550Zea maysZm.1140.1.S1_atBM073428hypothetical protein LOC100279272-4e-14At3g49670BAM2 (BARELY ANY MERISTEM 2)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006468The process of introducing a phosphate group on to a protein.
CGO:0007169The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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