CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g28500

Gene name ANAC073 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 73)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g28500 828968 ANAC073 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 73) F:transcription factor activity, transcription activator activity;P:multicellular organismal development, regulation of secondary cell wall thickening;C:nucleus;PO S.X. H.G.
0.96 97.3 At5g44030 834426 CESA4 (CELLULOSE SYNTHASE A4) Encodes a cellulose synthase involved in secondary cell wall biosynthesis. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling. S.X. H.G.
0.95 97.0 At4g27435 828852 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.95 97.0 At5g15630 831417 IRX6 Encodes a member of the COBRA family, similar to phytochelatin synthetase. Involved in secondary cell wall biosynthesis. Mutants make smaller plants with reduced levels of cellulose and cell wall sugars. S.X. H.G.
0.94 96.7 At3g16920 820947 chitinase F:chitinase activity;P:cell wall macromolecule catabolic process;C:unknown;PBMOF S.X. H.G.
0.93 96.4 At5g17420 831608 IRX3 (IRREGULAR XYLEM 3) Encodes a xylem-specific cellulose synthase that is phosphorylated on one or more serine residues (on either S185 or one of S180 or S181). S.X. H.G.
0.93 96.4 At2g38080 818386 IRX12 (IRREGULAR XYLEM 12) Encodes a protein with similarity to putative laccase, a member of laccase family (17 members in Arabidopsis). Might be involved in cell wall biosynthesis. Mutants have a mild irregular xylem phenotype. S.X. H.G.
0.91 95.6 At2g41610 818759 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.91 95.6 At5g03170 831914 FLA11 F:unknown;P:unknown;C:anchored to membrane;PBOMAF S.X. H.G.
0.91 95.6 At5g67210 836856 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
373.9 100.0 GSM131655 ATGE_27_A GSE5633 AtGenExpress: Developmental series (shoots and stems)
331.1 100.0 E-MEXP-1451-raw-cel-1585200362
296.4 100.0 GSM131656 ATGE_27_B GSE5633 AtGenExpress: Developmental series (shoots and stems)
291.4 100.0 GSM131657 ATGE_27_C GSE5633 AtGenExpress: Developmental series (shoots and stems)
159.1 99.9 E-MEXP-265-raw-cel-414618394
148.2 99.9 E-MEXP-265-raw-cel-414618291
137.7 99.9 GSM133753 Turner_A-7-Turne-WT-Base1_SLD GSE5729 Role of COV in vascular patterning
133.4 99.9 GSM133962 Fukuda_1-7_6A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
122.3 99.9 E-MEXP-265-raw-cel-414618491
111.4 99.9 GSM184904 Arabidopsis, root cells, protophloem, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.11 8e-6 52 At5g56620 835763 anac099 (Arabidopsis NAC domain containing protein 99) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PM C.G. S.X.
0.09 8e-6 52 At4g29230 829044 anac075 (Arabidopsis NAC domain containing protein 75) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:unknown;PMOFBV C.G. S.X.
0.12 1e-4 48 At1g28470 839747 ANAC010 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 10) F:transcription factor activity, transcription activator activity;P:multicellular organismal development, regulation of secondary cell wall thickening;C:nucleus;P C.G. S.X.
0.03 2e-3 44 At5g18270 831945 ANAC087 F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P C.G. S.X.
0.02 2e+0 34 At5g67450 836881 AZF1 (ARABIDOPSIS ZINC-FINGER PROTEIN 1) Encodes zinc-finger protein. mRNA levels are elevated in response to low temperature, cold temperatures and high salt. The protein is localized to the nucleus and acts as a transcriptional repressor. C.G. S.X.
0.02 2e+0 34 At5g67110 836846 ALC (ALCATRAZ) encodes a myc/bHLH transcription factor-like protein. Gene product is involved in fruit dehiscence. Mutant siliques fail to dehisce. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 2e-4 48 Glycine max GmaAffx.21152.1.S1_at AW472375 - - 2e-8 At1g25580 ANAC008 (Arabidopsis NAC domain containing protein 8) C.G. S.X.
0.12 9e-7 54 Hordeum vulgare Contig11856_at Contig11856 - - 3e-6 At4g28500 ANAC073 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 73) C.G. S.X.
0.10 6e-8 59 Oryza sativa Os05g0563000 AK100983.1 - No apical meristem (NAM) protein domain containingprotein 5e-5 At1g28470 ANAC010 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 10) C.G. S.X.
0.31 2e-7 57 Populus trichocarpa PtpAffx.15627.2.S1_s_at CK102877 NAC domain protein, IPR003441 - 2e-12 At4g28500 ANAC073 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 73) C.G. S.X.
0.07 3e-2 40 Triticum aestivum Ta.8999.1.A1_at BJ251866 - - 3e-2 At4g28500 ANAC073 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 73) C.G. S.X.
0.07 1e-4 46 Vitis vinifera 1617033_at CF511776 hypothetical protein LOC100250388 - 9e-10 At1g28470 ANAC010 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 10) C.G. S.X.
0.06 8e-7 54 Zea mays Zm.15601.1.S1_at CF045441 - - 6e-3 At1g28470 ANAC010 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 10) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0007275 The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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