CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g28460

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g28460 828963 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.88 94.0 At2g23270 816859 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.88 94.0 At2g37430 818319 zinc finger (C2H2 type) family protein (ZAT11) F:transcription factor activity, zinc ion binding, nucleic acid binding;P:response to chitin, regulation of transcription;C:intracellular;MPOF S.X. H.G.
0.81 90.4 At1g68765 843208 IDA (INFLORESCENCE DEFICIENT IN ABSCISSION) Encodes a small protein of 77 amino acids. Loss of function mutations are defective in the process of ethylene independent floral organ abscission. Although the mutants have a normal appearing abscission zone, the floral organs do not abscisce. The peptide appears to be secreted and may function as a ligand. Arabidopsis 35S:IDA lines constitutively overexpressing IDA exhibit earlier abscission of floral organs, showing that the abscission zones are responsive to IDA soon after the opening of the flowers. In addition, ectopic abscission was observed at the bases of the pedicel, branches of the inflorescence, and cauline leaves. The silique valves also dehisced prematurely. S.X. H.G.
0.81 90.4 At1g69930 843329 ATGSTU11 (GLUTATHIONE S-TRANSFERASE TAU 11) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). S.X. H.G.
0.79 89.1 At1g14540 838016 anionic peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM S.X. H.G.
0.71 84.2 At5g24110 832476 WRKY30 member of WRKY Transcription Factor; Group III S.X. H.G.
0.71 84.2 At1g30370 839917 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:unknown;PBOFMV S.X. H.G.
0.68 82.2 At3g23220 821900 DNA binding / transcription factor encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. S.X. H.G.
0.65 79.6 At2g32030 817763 GCN5-related N-acetyltransferase (GNAT) family protein F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;BOFPAVM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
708.4 100.0 E-MEXP-807-raw-cel-1173273144
621.2 100.0 E-MEXP-807-raw-cel-1173273252
362.6 100.0 E-MEXP-807-raw-cel-1173273116
302.8 100.0 E-MEXP-807-raw-cel-1173273170
292.3 100.0 E-MEXP-807-raw-cel-1173273060
277.2 100.0 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
247.6 100.0 GSM13779 Dexamethasone plus cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
230.2 100.0 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
214.1 100.0 GSM13780 Cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
201.2 100.0 E-MEXP-807-raw-cel-1173273088
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 3e-2 38 At4g12430 826855 trehalose-6-phosphate phosphatase, putative F:catalytic activity, trehalose-phosphatase activity;P:trehalose biosynthetic process, metabolic process;C:unknown;BPMOFA C.G. S.X.
0.02 3e-2 38 At3g06830 819867 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFOAM C.G. S.X.
0.02 3e-2 38 At3g59010 825070 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO C.G. S.X.
0.02 1e-1 36 At1g05800 837089 DGL (DONGLE) Encodes a galactolipase. Located in the chloroplast. Involved in the initial step of jasmonic acid biosynthesis. Expressed in vegetative tissues and is necessary for the biosynthesis of basal-level JAs in vegetative tissues. C.G. S.X.
0.02 1e-1 36 At1g53830 841820 ATPME2 encodes a pectin methylesterase C.G. S.X.
0.02 1e-1 36 At1g23200 838928 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFAOM C.G. S.X.
0.02 4e-1 34 At4g34138 829561 UGT73B1 (UDP-glucosyl transferase 73B1) F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, abscisic acid glucosyltransferase activity;P:metabolic process;C:endomembrane system;PMBVOF C.G. S.X.
0.01 4e-1 34 At1g10390 837579 nucleoporin family protein F:transporter activity;P:transport;C:chloroplast, nuclear pore;MBOFPVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 9e+0 30 Glycine max PsAffx.psZS006xK09f_s_at PsAffx.psZS006xK09f - - 2e+0 At3g04620 nucleic acid binding C.G. S.X.
0.05 2e-1 34 Hordeum vulgare HS08I21u_s_at HS08I21u - - 8e-1 At4g28460 unknown protein C.G. S.X.
0.07 3e+0 32 Oryza sativa Os07g0418400 9635.m02244 - - 3e+0 At4g28460 unknown protein C.G. S.X.
0.06 2e+0 32 Populus trichocarpa PtpAffx.207684.1.S1_at pmrna15254 hypothetical protein - 4e-2 At2g39470 PPL2 (PsbP-like protein 2) C.G. S.X.
0.07 7e+0 30 Triticum aestivum TaAffx.79630.1.S1_at CA711596 - - 6e-1 At3g13780 - C.G. S.X.
0.04 2e+0 30 Vitis vinifera 1609283_at CF517947 hypothetical protein LOC100243520 - 3e-25 At1g06440 ubiquitin thiolesterase C.G. S.X.
0.05 3e+0 30 Zea mays ZmAffx.847.1.S1_at AI770627 - - 8e-4 At1g35560 TCP family transcription factor, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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