Gene omics information

Query gene ID At4g28460
Gene name unknown protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At4g28460828963unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.8894.0At2g23270816859unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.8894.0At2g37430818319zinc finger (C2H2 type) family protein (ZAT11)F:transcription factor activity, zinc ion binding, nucleic acid binding;P:response to chitin, regulation of transcription;C:intracellular;MPOFS.X.H.G.
0.8190.4At1g68765843208IDA (INFLORESCENCE DEFICIENT IN ABSCISSION)Encodes a small protein of 77 amino acids. Loss of function mutations are defective in the process of ethylene independent floral organ abscission. Although the mutants have a normal appearing abscission zone, the floral organs do not abscisce. The peptide appears to be secreted and may function as a ligand. Arabidopsis 35S:IDA lines constitutively overexpressing IDA exhibit earlier abscission of floral organs, showing that the abscission zones are responsive to IDA soon after the opening of the flowers. In addition, ectopic abscission was observed at the bases of the pedicel, branches of the inflorescence, and cauline leaves. The silique valves also dehisced prematurely.S.X.H.G.
0.8190.4At1g69930843329ATGSTU11 (GLUTATHIONE S-TRANSFERASE TAU 11)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).S.X.H.G.
0.7989.1At1g14540838016anionic peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBMS.X.H.G.
0.7184.2At5g24110832476WRKY30member of WRKY Transcription Factor; Group IIIS.X.H.G.
0.7184.2At1g30370839917lipase class 3 family proteinF:triacylglycerol lipase activity;P:lipid metabolic process;C:unknown;PBOFMVS.X.H.G.
0.6882.2At3g23220821900DNA binding / transcription factorencodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.S.X.H.G.
0.6579.6At2g32030817763GCN5-related N-acetyltransferase (GNAT) family proteinF:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;BOFPAVMS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
708.4100.0E-MEXP-807-raw-cel-1173273144
621.2100.0E-MEXP-807-raw-cel-1173273252
362.6100.0E-MEXP-807-raw-cel-1173273116
302.8100.0E-MEXP-807-raw-cel-1173273170
292.3100.0E-MEXP-807-raw-cel-1173273060
277.2100.0GSM13783Dexamethasone plus cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
247.6100.0GSM13779Dexamethasone plus cycloheximideGSE911Identification of LEAFY targets during reproductive transition
230.2100.0GSM13784Cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
214.1100.0GSM13780CycloheximideGSE911Identification of LEAFY targets during reproductive transition
201.2100.0E-MEXP-807-raw-cel-1173273088
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.033e-238At4g12430826855trehalose-6-phosphate phosphatase, putativeF:catalytic activity, trehalose-phosphatase activity;P:trehalose biosynthetic process, metabolic process;C:unknown;BPMOFAC.G.S.X.
0.023e-238At3g06830819867pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFOAMC.G.S.X.
0.023e-238At3g59010825070pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMOC.G.S.X.
0.021e-136At1g05800837089DGL (DONGLE)Encodes a galactolipase. Located in the chloroplast. Involved in the initial step of jasmonic acid biosynthesis. Expressed in vegetative tissues and is necessary for the biosynthesis of basal-level JAs in vegetative tissues.C.G.S.X.
0.021e-136At1g53830841820ATPME2encodes a pectin methylesteraseC.G.S.X.
0.021e-136At1g23200838928pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFAOMC.G.S.X.
0.024e-134At4g34138829561UGT73B1 (UDP-glucosyl transferase 73B1)F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, abscisic acid glucosyltransferase activity;P:metabolic process;C:endomembrane system;PMBVOFC.G.S.X.
0.014e-134At1g10390837579nucleoporin family proteinF:transporter activity;P:transport;C:chloroplast, nuclear pore;MBOFPVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.069e+030Glycine maxPsAffx.psZS006xK09f_s_atPsAffx.psZS006xK09f--2e+0At3g04620nucleic acid bindingC.G.S.X.
0.052e-134Hordeum vulgareHS08I21u_s_atHS08I21u--8e-1At4g28460unknown proteinC.G.S.X.
0.073e+032Oryza sativaOs07g04184009635.m02244--3e+0At4g28460unknown proteinC.G.S.X.
0.062e+032Populus trichocarpaPtpAffx.207684.1.S1_atpmrna15254hypothetical protein-4e-2At2g39470PPL2 (PsbP-like protein 2)C.G.S.X.
0.077e+030Triticum aestivumTaAffx.79630.1.S1_atCA711596--6e-1At3g13780-C.G.S.X.
0.042e+030Vitis vinifera1609283_atCF517947hypothetical protein LOC100243520-3e-25At1g06440ubiquitin thiolesteraseC.G.S.X.
0.053e+030Zea maysZmAffx.847.1.S1_atAI770627--8e-4At1g35560TCP family transcription factor, putativeC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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