CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g28085

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.53 68.6 At4g28085 828924 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P S.X. H.G.
0.44 57.2 At4g15975 827281 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:response to chitin;C:endomembrane system;MPFOV S.X. H.G.
0.33 38.1 At5g57220 835828 CYP81F2 member of CYP81F, involved in glucosinolate metabolism. Mutants had impaired resistance to fungi. S.X. H.G.
0.20 14.4 At3g54150 824582 embryo-abundant protein-related F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOA S.X. H.G.
0.12 4.9 At4g21390 827891 B120 F:protein serine/threonine kinase activity, sugar binding, protein kinase activity, ATP binding;P:protein amino acid phosphorylation, recognition of pollen;C:plasma membrane;MPOBFVA S.X. H.G.
0.10 3.4 At2g33710 817936 AP2 domain-containing transcription factor family protein encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
273.4 100.0 GSM13779 Dexamethasone plus cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
266.2 100.0 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
262.0 100.0 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
233.2 100.0 GSM13780 Cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
120.5 99.9 GSM39213 RRE2_Chitin3 GSE2169 rre1 and rre2 mutants
102.6 99.9 GSM39196 RRE1_Chitin2 GSE2169 rre1 and rre2 mutants
101.8 99.9 GSM39212 RRE2_Chitin2 GSE2169 rre1 and rre2 mutants
89.0 99.9 GSM39214 RRE2_Chitin4 GSE2169 rre1 and rre2 mutants
88.4 99.9 GSM39195 RRE1_Chitin1 GSE2169 rre1 and rre2 mutants
85.4 99.9 GSM39197 RRE1_Chitin3 GSE2169 rre1 and rre2 mutants
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 5e-4 44 At5g24910 832560 CYP714A1 member of CYP714A C.G. S.X.
0.03 3e-2 38 At2g40925 818690 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO C.G. S.X.
0.08 3e-2 38 At1g04555 5007662 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM C.G. S.X.
0.01 1e-1 36 At5g12150 831088 pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing protein Encodes a protein with similarity to REN1, a Rho GTPase activating protein. C.G. S.X.
0.17 1e-1 36 At5g57887 835899 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.03 1e-1 36 At5g66660 836798 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO C.G. S.X.
0.02 1e-1 36 At5g17540 831620 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups;P:biological_process unknown;C:cellular_component unknown;PFBO C.G. S.X.
0.02 1e-1 36 At3g07050 819890 GTP-binding family protein F:GTP binding;P:biological_process unknown;C:nucleolus;BMOFPAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 2e-1 36 Glycine max GmaAffx.85644.1.A1_at CA938743 - - 6e-2 At5g61270 PIF7 (PHYTOCHROME-INTERACTING FACTOR7) C.G. S.X.
0.04 9e-1 32 Hordeum vulgare Contig24340_at Contig24340 - - 2e-2 At1g76690 OPR2 C.G. S.X.
0.06 9e-1 34 Oryza sativa OsAffx.17451.1.S1_at - - - 0 C.G. S.X.
0.05 7e-1 34 Populus trichocarpa PtpAffx.216592.1.S1_at pmrna31475 SAUR family protein - 4e-9 At4g31320 auxin-responsive protein, putative / small auxin up RNA (SAUR_C) C.G. S.X.
0.07 1e-1 36 Triticum aestivum TaAffx.24874.1.S1_at CA710703 - - 7e+0 At3g09940 MDHAR (MONODEHYDROASCORBATE REDUCTASE) C.G. S.X.
0.04 6e-1 32 Vitis vinifera 1621192_at CF516648 hypothetical protein LOC100248705 - 4e+0 At2g27920 SCPL51 (SERINE CARBOXYPEPTIDASE-LIKE 51) C.G. S.X.
0.05 3e+0 30 Zea mays ZmAffx.1353.1.S1_at 40794996-44 - - 6e-1 At5g35338 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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