CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g28080

Gene name binding

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g28080 828923 binding F:binding;P:unknown;C:unknown;MBFOPAV S.X. H.G.
0.75 86.9 At1g01320 839293 tetratricopeptide repeat (TPR)-containing protein F:binding;P:unknown;C:cellular_component unknown;MBFOPAV S.X. H.G.
0.29 30.3 At4g01800 827922 preprotein translocase secA subunit, putative F:protein binding, ATP binding;P:intracellular protein transport, protein targeting, protein import;C:chloroplast stroma, chloroplast, chloroplast envelope;OBPMA S.X. H.G.
0.26 24.4 At4g29060 829027 emb2726 (embryo defective 2726) F:RNA binding, translation elongation factor activity;P:embryonic development ending in seed dormancy, translational elongation, response to cadmium ion;C:chloroplast stroma, chloroplast, chloroplast envelope;BOMFPAV S.X. H.G.
0.23 19.3 At1g62750 842573 SCO1 (SNOWY COTYLEDON 1) Nuclear encoded protein consists of the five domains conserved in EF-G proteins, with two GTP-binding sites in the first domain, and an additional transit peptide at the N-terminus. Localized in chloroplasts. Point mutation results in a delay in the onset of germination. At early developmental stage embryos still contain undifferentiated proplastids. The greening of cotyledons is severely impaired in light-grown mutant sco1 seedlings, whereas the following true leaves develop normally as in wild-type plants. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
11.9 99.3 GSM131471 ATGE_7_A2 GSE5629 AtGenExpress: Developmental series (seedlings and whole plants)
10.7 99.2 GSM318345 ML_35DAS_2 GSE12676 Arabidopsis thaliana Ler developmental series
10.4 99.2 E-TABM-18-raw-cel-489543301
10.2 99.2 E-TABM-18-raw-cel-489543413
10.0 99.2 GSM131472 ATGE_7_B2 GSE5629 AtGenExpress: Developmental series (seedlings and whole plants)
9.6 99.1 GSM94009 A1-1 third repeat GSE4113 Arabidopsis plants with altered levels of alternative oxidase
9.4 99.1 E-MEXP-475-raw-cel-680982476
9.1 99.1 E-TABM-21-raw-cel-529816241
9.0 99.1 GSM94010 Wild type third repeat GSE4113 Arabidopsis plants with altered levels of alternative oxidase
8.9 99.0 GSM183504 WT_for_MYB29/76_rep1 GSE7570 ATR1_like_Clade_OE_and_miR
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.11 2e-37 159 At1g01320 839293 tetratricopeptide repeat (TPR)-containing protein F:binding;P:unknown;C:cellular_component unknown;MBFOPAV C.G. S.X.
0.07 3e-18 95 At1g15290 838097 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MBOFPAV C.G. S.X.
0.01 3e-3 46 At4g26300 828736 emb1027 (embryo defective 1027) F:nucleotide binding, aminoacyl-tRNA ligase activity, arginine-tRNA ligase activity, ATP binding;P:embryonic development ending in seed dormancy, arginyl-tRNA aminoacylation;C:mitochondrion, chloroplast;OBMAFPV C.G. S.X.
0.01 2e-1 40 At4g15810 827262 GTP binding F:GTP binding;P:biological_process unknown;C:chloroplast outer membrane;BMOPFA C.G. S.X.
0.01 2e-1 40 At1g79930 844333 HSP91 encodes high molecular weight heat shock protein 70 not a HSP90 homolog, mRNA is constitutively expressed but transiently induced after heat shock C.G. S.X.
0.01 6e-1 38 At5g20390 832161 beta-1,3-glucanase, putative F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;POB C.G. S.X.
0.01 6e-1 38 At5g43530 834373 SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein F:in 8 functions;P:unknown;C:chloroplast envelope;MBOFPVA C.G. S.X.
0.01 6e-1 38 At1g04470 839512 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 9e-1 38 Glycine max GmaAffx.4970.1.S1_at BM085400 - - 3e+0 At5g26070 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.01 3e-1 38 Hordeum vulgare Contig6105_s_at Contig6105 - - 2e-1 At3g24770 CLE41 (CLAVATA3/ESR-RELATED 41) C.G. S.X.
0.20 8e-73 278 Oryza sativa OsAffx.24269.1.S1_at - - - 0 C.G. S.X.
0.25 2e-35 153 Populus trichocarpa PtpAffx.206540.1.S1_at pmrna12974 hypothetical protein - 8e-36 At4g28080 binding C.G. S.X.
0.01 2e-1 40 Triticum aestivum TaAffx.85525.1.S1_at CA622003 - - 4e+0 At4g08230 glycine-rich protein C.G. S.X.
0.09 6e-20 99 Vitis vinifera 1622650_at CD714725 - - 1e-71 At1g15290 binding C.G. S.X.
0.08 8e-17 89 Zea mays Zm.6108.2.S1_at CA399319 - - 5e-37 At1g15290 binding C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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