CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g28050

Gene name TET7 (TETRASPANIN7)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.46 59.8 At4g28050 828920 TET7 (TETRASPANIN7) Member of TETRASPANIN family S.X. H.G.
0.67 81.6 At5g10480 830912 PAS2 (PASTICCINO 2) Protein tyrosine phosphatase-like involved in cell division and differentiation. Interacts with CDKA;1 only in its phosphorylated form, preventing dephosphorylation. Overexpression slowed down cell division in suspension cell cultures at the G2-to-M transition and early mitosis and inhibited Arabidopsis seedling growth. Localized in the cytoplasm of dividing cells but moved into the nucleus upon cell differentiation. Based on complementation of yeast mutant PAS2 has acyl-CoA dehydratase activity. It interacts with CER10, a component of the microsomal fatty acid elongase complex, suggesting a role in synthesis of VLCFAs (very long chain fatty acids). S.X. H.G.
0.40 50.8 At3g55360 824702 CER10 Enoyl-CoA reductase is involved in all very long chain fatty acids (VLCFA) elongation reactions that are required for cuticular wax, storage lipid and sphingolipid metabolism. The protein is located in the ER, but in contrast to its yeast homolog TSC13 is not particularly enriched in the nuclear envelope-vacuole junction. Mutants in this gene show abnormal organ morphology and stem glossiness. Cells in all tissues are only about 1/3 of the size of wild type cells. The morphological changes are most likely to result from the reduction in the VLCFA content of sphingolipids. Mutants also show abnormalities in the endocytic membrane organization and transport. S.X. H.G.
0.33 38.1 At1g04820 839405 TUA4 Encodes an alpha tubulin isoform that is expressed in roots, leaves and flowers. S.X. H.G.
0.33 38.1 At2g14890 815978 AGP9 (ARABINOGALACTAN PROTEIN 9) putative proline-rich protein (At2g14890) mRNA, complete S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
21.1 99.6 GSM134515 Col-0_4day_dark_+lincomycin_rep1 GSE5759 red illumination w/o lincomycin
20.3 99.6 GSM134514 Col-0_4day_dark_-lincomycin_rep2 GSE5759 red illumination w/o lincomycin
19.7 99.6 GSM134518 Col-0_4day_red illumination_-lincomycin_rep2 GSE5759 red illumination w/o lincomycin
18.9 99.5 GSM134517 Col-0_4day_red illumination_-lincomycin_rep1 GSE5759 red illumination w/o lincomycin
18.1 99.5 GSM134516 Col-0_4day_dark_+lincomycin_rep2 GSE5759 red illumination w/o lincomycin
15.2 99.4 GSM242957 Mock day 3 (day3E1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
14.0 99.4 GSM134519 Col-0_4day_red illumination_+lincomycin_rep1 GSE5759 red illumination w/o lincomycin
13.9 99.4 GSM134513 Col-0_4day_dark_-lincomycin_rep1 GSE5759 red illumination w/o lincomycin
13.8 99.4 GSM133979 Birnbaum_1-9_StageII-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
13.7 99.4 GSM134520 Col-0_4day_red illumination _+lincomycin_rep2 GSE5759 red illumination w/o lincomycin
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.17 3e-11 69 At2g23810 816913 TET8 (TETRASPANIN8) Member of TETRASPANIN family C.G. S.X.
0.10 2e-3 44 At4g30430 829166 TET9 (TETRASPANIN9) Member of TETRASPANIN family C.G. S.X.
0.01 4e-1 36 At5g58960 836013 GIL1 (GRAVITROPIC IN THE LIGHT) Mutant plants display impaired light-regulation of the hypocotyl randomization response. C.G. S.X.
0.01 4e-1 36 At4g11550 826759 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMO C.G. S.X.
0.04 4e-1 36 At3g45600 823702 TET3 (TETRASPANIN3) Member of TETRASPANIN family C.G. S.X.
0.02 4e-1 36 At1g13410 837901 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFM C.G. S.X.
0.02 4e-1 36 At1g54780 841919 thylakoid lumen 18.3 kDa protein F:molecular_function unknown;P:biological_process unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BPOM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 6e-10 65 Glycine max Gma.2590.7.S1_at CA783976 - - 7e-10 At4g28050 TET7 (TETRASPANIN7) C.G. S.X.
0.15 1e-5 50 Hordeum vulgare Contig3054_at Contig3054 - - 3e-5 At4g28050 TET7 (TETRASPANIN7) C.G. S.X.
0.17 3e-9 63 Oryza sativa Os06g0653100 9634.m04290 - Senescence-associated protein 5 2e-9 At4g28050 TET7 (TETRASPANIN7) C.G. S.X.
0.15 6e-4 46 Populus trichocarpa PtpAffx.11517.1.S1_at CV274782 hypothetical protein - 6e-4 At4g28050 TET7 (TETRASPANIN7) C.G. S.X.
0.12 7e-12 71 Triticum aestivum Ta.1739.2.S1_a_at BE443920 - - 1e-11 At4g28050 TET7 (TETRASPANIN7) C.G. S.X.
0.08 2e-6 52 Vitis vinifera 1608186_at CB007992 hypothetical protein LOC100243286 - 7e-4 At4g30430 TET9 (TETRASPANIN9) C.G. S.X.
0.05 1e-2 40 Zea mays Zm.1425.1.S1_at BM380501 senescence-associated protein DH - 3e-9 At2g23810 TET8 (TETRASPANIN8) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0007568 The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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