CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g27730

Gene name OPT6 (OLIGOPEPTIDE TRANSPORTER 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g27730 828887 OPT6 (OLIGOPEPTIDE TRANSPORTER 1) oligopeptide transporter S.X. H.G.
0.64 78.9 At2g32910 817853 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBF S.X. H.G.
0.63 78.1 At1g43130 840912 LCV2 (LIKE COV 2) F:molecular_function unknown;P:stem vascular tissue pattern formation;C:cellular_component unknown;OBPA S.X. H.G.
0.59 74.7 At5g07840 830677 ankyrin repeat family protein F:protein binding;P:biological_process unknown;C:unknown;MOFBPVA S.X. H.G.
0.50 65.3 At4g16444 827341 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MP S.X. H.G.
0.47 61.2 At1g23220 838931 dynein light chain type 1 family protein F:microtubule motor activity;P:microtubule-based process;C:microtubule associated complex;MOPF S.X. H.G.
0.46 59.8 At5g45590 834597 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPO S.X. H.G.
0.41 52.4 At4g21100 827857 DDB1B (Damaged DNA Binding Protein 1 B) One of two closely related genes similar to a damaged DNA binding protein originally described in mammals. May form a complex with DET1 to regulate photomorphogenesis. Loss of function mutations are lethal. The DDB1b protein binds with a number of DWD-containing proteins and may form part of a CUL4-based E3 ubiquitin ligase. S.X. H.G.
0.33 38.1 At5g62600 836381 transportin-SR-related F:protein transporter activity, binding;P:intracellular protein transport, protein import into nucleus, docking;C:nucleus, nuclear pore, cytoplasm;MFPOB S.X. H.G.
0.30 32.1 At2g20580 816580 RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) encoding the RPN subunits of the 26S proteasome S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
187.7 100.0 GSM133761 Lindsey_1-13_torpedo-cotyledon_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
162.0 99.9 GSM133307 RIKEN-NAKABAYASHI3A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
125.4 99.9 GSM133308 RIKEN-NAKABAYASHI4A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
121.4 99.9 E-MEXP-1725-raw-cel-1669614603
118.7 99.9 E-MEXP-1725-raw-cel-1669614572
104.8 99.9 E-MEXP-1725-raw-cel-1669614613
95.1 99.9 E-MEXP-1725-raw-cel-1669614592
89.4 99.9 GSM133305 RIKEN-NAKABAYASHI2A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
79.4 99.9 GSM133310 RIKEN-NAKABAYASHI5B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
59.6 99.8 GSM133306 RIKEN-NAKABAYASHI2B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.71 2e-147 523 At5g53510 835433 ATOPT9 (ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 9) oligopeptide transporter C.G. S.X.
0.21 2e-33 145 At5g53520 835434 ATOPT8 (ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 8) oligopeptide transporter C.G. S.X.
0.09 9e-17 89 At5g64410 836562 OPT4 (OLIGOPEPTIDE TRANSPORTER 4) oligopeptide transporter C.G. S.X.
0.07 1e-9 65 At4g10770 826672 OPT7 (OLIGOPEPTIDE TRANSPORTER 7) oligopeptide transporter C.G. S.X.
0.03 8e-8 59 At5g55930 835691 OPT1 (OLIGOPEPTIDE TRANSPORTER 1) oligopeptide transporter C.G. S.X.
0.07 7e-5 50 At4g26590 828766 OPT5 (OLIGOPEPTIDE TRANSPORTER 5) oligopeptide transporter C.G. S.X.
0.08 7e-5 50 At1g09930 837525 ATOPT2 oligopeptide transporter C.G. S.X.
0.05 5e-3 44 At4g16370 827332 ATOPT3 (OLIGOPEPTIDE TRANSPORTER) Encodes an oligopeptide transporter involved in metal homeostasis. C.G. S.X.
0.01 7e-2 40 At2g26860 817227 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 1e-4 50 Glycine max GmaAffx.64151.1.S1_at BM887517 - - 2e-32 At5g64410 OPT4 (OLIGOPEPTIDE TRANSPORTER 4) C.G. S.X.
0.01 5e-1 36 Hordeum vulgare HI05O15u_at HI05O15u - - 1e+0 At5g57000 unknown protein C.G. S.X.
0.07 9e-3 44 Oryza sativa Os.17167.1.S1_at - - - 0 C.G. S.X.
0.14 2e-15 85 Populus trichocarpa PtpAffx.203320.1.S1_at pmrna6601 oligopeptide transporter OPT family - 7e-39 At4g10770 OPT7 (OLIGOPEPTIDE TRANSPORTER 7) C.G. S.X.
0.02 1e+0 36 Triticum aestivum Ta.1984.1.S1_at BG604569 - - 5e-32 At4g16370 ATOPT3 (OLIGOPEPTIDE TRANSPORTER) C.G. S.X.
0.10 3e-4 46 Vitis vinifera 1621164_at AY091634.1 peptide/glutathione transporter OPT1 /// hypothetical protein LOC100257243 - 4e-4 At4g27730 OPT6 (OLIGOPEPTIDE TRANSPORTER 1) C.G. S.X.
0.02 5e-1 36 Zea mays Zm.16913.1.S1_at BQ619268 GT1 protein - 2e-24 At4g16370 ATOPT3 (OLIGOPEPTIDE TRANSPORTER) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0006857 The directed movement of oligopeptides into, out of, within or between cells. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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