Gene omics information

Query gene ID At4g27730
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At4g27730828887OPT6 (OLIGOPEPTIDE TRANSPORTER 1)oligopeptide transporterS.X.H.G.
0.6478.9At2g32910817853-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFS.X.H.G.
0.6378.1At1g43130840912LCV2 (LIKE COV 2)F:molecular_function unknown;P:stem vascular tissue pattern formation;C:cellular_component unknown;OBPAS.X.H.G.
0.5974.7At5g07840830677ankyrin repeat family proteinF:protein binding;P:biological_process unknown;C:unknown;MOFBPVAS.X.H.G.
0.5065.3At4g16444827341unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPS.X.H.G.
0.4761.2At1g23220838931dynein light chain type 1 family proteinF:microtubule motor activity;P:microtubule-based process;C:microtubule associated complex;MOPFS.X.H.G.
0.4659.8At5g45590834597unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOS.X.H.G.
0.4152.4At4g21100827857DDB1B (Damaged DNA Binding Protein 1 B)One of two closely related genes similar to a damaged DNA binding protein originally described in mammals. May form a complex with DET1 to regulate photomorphogenesis. Loss of function mutations are lethal. The DDB1b protein binds with a number of DWD-containing proteins and may form part of a CUL4-based E3 ubiquitin ligase.S.X.H.G.
0.3338.1At5g62600836381transportin-SR-relatedF:protein transporter activity, binding;P:intracellular protein transport, protein import into nucleus, docking;C:nucleus, nuclear pore, cytoplasm;MFPOBS.X.H.G.
0.3032.1At2g20580816580RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A)encoding the RPN subunits of the 26S proteasomeS.X.H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
187.7100.0GSM133761Lindsey_1-13_torpedo-cotyledon_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
162.099.9GSM133307RIKEN-NAKABAYASHI3AGSE5700AtGenExpress: Effect of ABA during seed imbibition
125.499.9GSM133308RIKEN-NAKABAYASHI4AGSE5700AtGenExpress: Effect of ABA during seed imbibition
89.499.9GSM133305RIKEN-NAKABAYASHI2AGSE5700AtGenExpress: Effect of ABA during seed imbibition
79.499.9GSM133310RIKEN-NAKABAYASHI5BGSE5700AtGenExpress: Effect of ABA during seed imbibition
59.699.8GSM133306RIKEN-NAKABAYASHI2BGSE5700AtGenExpress: Effect of ABA during seed imbibition
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.712e-147523At5g53510835433ATOPT9 (ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 9)oligopeptide transporterC.G.S.X.
0.212e-33145At5g53520835434ATOPT8 (ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 8)oligopeptide transporterC.G.S.X.
0.099e-1789At5g64410836562OPT4 (OLIGOPEPTIDE TRANSPORTER 4)oligopeptide transporterC.G.S.X.
0.071e-965At4g10770826672OPT7 (OLIGOPEPTIDE TRANSPORTER 7)oligopeptide transporterC.G.S.X.
0.038e-859At5g55930835691OPT1 (OLIGOPEPTIDE TRANSPORTER 1)oligopeptide transporterC.G.S.X.
0.077e-550At4g26590828766OPT5 (OLIGOPEPTIDE TRANSPORTER 5)oligopeptide transporterC.G.S.X.
0.087e-550At1g09930837525ATOPT2oligopeptide transporterC.G.S.X.
0.055e-344At4g16370827332ATOPT3 (OLIGOPEPTIDE TRANSPORTER)Encodes an oligopeptide transporter involved in metal homeostasis.C.G.S.X.
0.017e-240At2g26860817227F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOC.G.S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.051e-450Glycine maxGmaAffx.64151.1.S1_atBM887517--2e-32At5g64410OPT4 (OLIGOPEPTIDE TRANSPORTER 4)C.G.S.X.
0.015e-136Hordeum vulgareHI05O15u_atHI05O15u--1e+0At5g57000unknown proteinC.G.S.X.
0.079e-344Oryza sativaOs.17167.1.S1_at---0C.G.S.X.
0.142e-1585Populus trichocarpaPtpAffx.203320.1.S1_atpmrna6601oligopeptide transporter OPT family-7e-39At4g10770OPT7 (OLIGOPEPTIDE TRANSPORTER 7)C.G.S.X.
0.021e+036Triticum aestivumTa.1984.1.S1_atBG604569--5e-32At4g16370ATOPT3 (OLIGOPEPTIDE TRANSPORTER)C.G.S.X.
0.103e-446Vitis vinifera1621164_atAY091634.1peptide/glutathione transporter OPT1 /// hypothetical protein LOC100257243-4e-4At4g27730OPT6 (OLIGOPEPTIDE TRANSPORTER 1)C.G.S.X.
0.025e-136Zea maysZm.16913.1.S1_atBQ619268GT1 protein-2e-24At4g16370ATOPT3 (OLIGOPEPTIDE TRANSPORTER)C.G.S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0006857The directed movement of oligopeptides into, out of, within or between cells. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage