CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g27657

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.77 88.0 At4g27657 828879 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.74 86.1 At5g51190 835193 AP2 domain-containing transcription factor, putative encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. S.X. H.G.
0.72 84.8 At5g47220 834768 ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2) Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-2). The protein contains one AP2 domain. Functions as activator of GCC box–dependent transcription. Positive regulator of JA-responsive defense genes and resistance to F. oxysporum and enhances JA inhibition of root elongation. S.X. H.G.
0.72 84.8 At3g44260 823551 CCR4-NOT transcription complex protein, putative F:ribonuclease activity, nucleic acid binding;P:response to biotic stimulus, response to wounding, RNA modification;C:nucleus;MPOF S.X. H.G.
0.70 83.5 At5g52050 835280 MATE efflux protein-related F:drug transporter activity, antiporter activity;P:multidrug transport;C:membrane;BOPFAM S.X. H.G.
0.67 81.6 At5g66640 836796 DAR3 (DA1-RELATED PROTEIN 3) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBF S.X. H.G.
0.67 81.6 At2g14290 815916 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB S.X. H.G.
0.66 80.1 At2g44840 819093 ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13) encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. S.X. H.G.
0.65 79.6 At5g56980 835800 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PM S.X. H.G.
0.65 79.6 At5g42380 834244 CML37 (CALMODULIN LIKE 37) F:calcium ion binding;P:response to ozone;C:chloroplast;MPOFBV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
483.3 100.0 E-MEXP-807-raw-cel-1173273196
349.2 100.0 E-MEXP-807-raw-cel-1173273170
177.8 100.0 E-MEXP-807-raw-cel-1173273116
168.6 100.0 E-MEXP-807-raw-cel-1173273223
154.6 99.9 E-MEXP-807-raw-cel-1173273088
139.6 99.9 E-MEXP-807-raw-cel-1173273060
109.6 99.9 E-MEXP-807-raw-cel-1173273252
72.7 99.9 E-MEXP-98-raw-cel-320188914
70.3 99.9 E-MEXP-98-raw-cel-320188969
64.1 99.8 E-MEXP-807-raw-cel-1173273144
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.73 7e-24 109 At4g27652 828877 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P C.G. S.X.
0.27 1e-13 75 At4g27654 828878 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.37 9e-8 56 At5g54145 835502 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.01 3e-1 34 At4g36520 829804 heat shock protein binding F:heat shock protein binding;P:unknown;C:unknown;MOBFPAV C.G. S.X.
0.03 3e-1 34 At3g13410 820541 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;P C.G. S.X.
0.01 3e-1 34 At2g42270 818828 U5 small nuclear ribonucleoprotein helicase, putative F:in 6 functions;P:unknown;C:unknown;BOMFAPV C.G. S.X.
0.01 3e-1 34 At1g01320 839293 tetratricopeptide repeat (TPR)-containing protein F:binding;P:unknown;C:cellular_component unknown;MBFOPAV C.G. S.X.
0.04 1e+0 32 At3g27160 822335 GHS1 (GLUCOSE HYPERSENSITIVE 1) GHS1 encodes plastid ribosomal protein S21 C.G. S.X.
0.01 1e+0 32 At2g24640 817000 UBP19 (UBIQUITIN-SPECIFIC PROTEASE 19) F:cysteine-type endopeptidase activity, ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:endomembrane system;MOFPBVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e+0 32 Glycine max Gma.6849.1.S1_at BM092681 - - 4e+0 At4g27657 unknown protein C.G. S.X.
0.05 3e+0 30 Hordeum vulgare HV_CEb0010N06r2_at HV_CEb0010N06r2 - - 1e+0 At2g34270 unknown protein C.G. S.X.
0.05 7e-1 34 Oryza sativa OsAffx.6223.1.S1_at - - - 0 C.G. S.X.
0.03 5e-1 34 Populus trichocarpa PtpAffx.208513.1.S1_s_at pmrna16895 hypothetical protein - 2e+0 At4g27657 unknown protein C.G. S.X.
0.06 1e+0 32 Triticum aestivum TaAffx.119356.1.A1_at BJ276004 - - 2e-1 At5g42635 glycine-rich protein C.G. S.X.
0.05 2e+0 30 Vitis vinifera 1620365_at CF201468.1 - - 3e+0 At4g25950 VATG3 (vacuolar ATP synthase G3) C.G. S.X.
0.04 9e+0 28 Zea mays Zm.6228.1.A1_at AI739920 - - 1e+0 At1g64370 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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