CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g27654

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.66 80.1 At4g27654 828878 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.81 90.4 At2g05050 3767735 catalytic F:catalytic activity;P:biological_process unknown;C:cellular_component unknown S.X. H.G.
0.80 89.8 At1g27730 839666 STZ (salt tolerance zinc finger) Related to Cys2/His2-type zinc-finger proteins found in higher plants. Compensated for a subset of calcineurin deficiency in yeast. Salt tolerance produced by ZAT10 appeared to be partially dependent on ENA1/PMR2, a P-type ATPase required for Li+ and Na+ efflux in yeast. The protein is localized to the nucleus, acts as a transcriptional repressor and is responsive to chitin oligomers. Also involved in response to photooxidative stress. S.X. H.G.
0.75 86.9 At4g29780 829100 unknown protein F:unknown;P:unknown;C:cellular_component unknown;MPF S.X. H.G.
0.72 84.8 At3g28340 822462 GATL10 (Galacturonosyltransferase-like 10) Encodes a protein with putative galacturonosyltransferase activity. S.X. H.G.
0.72 84.8 At1g80840 844423 WRKY40 Pathogen-induced transcription factor. Binds W-box sequences in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Coexpression with WRKY18 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two. S.X. H.G.
0.72 84.8 At4g17500 827464 ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1) Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-1). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. S.X. H.G.
0.69 82.9 At5g45340 834570 CYP707A3 Encodes a protein with ABA 8'-hydroxylase activity; involved in ABA catabolism. Mutant analyses show that disruption in the gene results in more drought tolerance whereas overexpression results in increased transpiration rate and reduced drought tolerance. Gene involved in postgermination growth. Plant P450 CYP707A3, ABA 8'-hydroxylase, binds enantioselectively (+)-ABA but not (-)-ABA, whereas the enzyme binds both enantiomers of AHI1 (a structural ABA analogue used as ABA 8'-hydroxylase competitive inhibitor). S.X. H.G.
0.66 80.1 At3g02840 821225 immediate-early fungal elicitor family protein F:binding;P:response to other organism, response to ozone;C:unknown;PO S.X. H.G.
0.66 80.1 At4g34410 829591 RRTF1 ({REDOX RESPONSIVE TRANSCRIPTION FACTOR 1) encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
166.5 100.0 GSM218585 Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
118.7 99.9 GSM218586 Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
118.0 99.9 GSM142658 MC002_ATH1_A12.3-dubos-arh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
107.8 99.9 GSM184519 Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
90.7 99.9 GSM142649 MC002_ATH1_A9.3-dubos-aah GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
90.3 99.9 E-MEXP-807-raw-cel-1173273196
89.1 99.9 GSM142654 MC002_ATH1_A11.2-dubos-mxh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
87.7 99.9 GSM142648 MC002_ATH1_A9.2-dubos-aah GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
86.0 99.9 GSM142647 MC002_ATH1_A9.1-dubos-aah GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
83.0 99.9 GSM142655 MC002_ATH1_A11.3-dubos-mxh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.27 1e-13 75 At4g27657 828879 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.27 4e-7 54 At4g27652 828877 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P C.G. S.X.
0.17 2e-3 42 At5g54145 835502 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.03 2e+0 32 At5g07610 830654 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;POF C.G. S.X.
0.01 2e+0 32 At4g32070 829338 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein F:binding;P:biological_process unknown;C:vacuole;MOPFBAV C.G. S.X.
0.01 2e+0 32 At1g27180 839607 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAV C.G. S.X.
0.02 6e+0 30 At4g39490 3770599 CYP96A10 member of CYP96A C.G. S.X.
0.01 6e+0 30 At3g04980 819658 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;OBMFPAV C.G. S.X.
0.03 6e+0 30 At3g13410 820541 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 8e+0 30 Glycine max GmaAffx.74428.1.A1_at BU546235 - - 9e-7 At3g14320 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.05 1e+1 28 Hordeum vulgare Contig11524_s_at Contig11524 - - 3e+0 At4g28240 wound-responsive protein-related C.G. S.X.
0.05 1e+1 30 Oryza sativa Os10g0321700 AK066810.1 - Glycine-rich RNA-binding protein PsGRBP 1e+0 At1g53935 unknown protein C.G. S.X.
0.06 8e+0 30 Populus trichocarpa PtpAffx.67442.1.S1_at DN498472 - - 3e+0 At3g48237 unknown protein C.G. S.X.
0.05 6e+0 30 Triticum aestivum Ta.4368.1.A1_at BJ264946 - - 1e+0 At4g02600 MLO1 C.G. S.X.
0.04 7e+0 28 Vitis vinifera 1622254_at CB341104 - - 2e-1 At2g33793 unknown protein C.G. S.X.
0.04 3e+0 30 Zea mays Zm.6908.1.A1_at AI065637 - - 2e-1 At1g25370 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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