Gene omics information

Query gene ID At4g27390
Gene name unknown protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7486.1At4g27390828847unknown proteinF:unknown;P:biological_process unknown;C:chloroplast;BPS.X.H.G.
0.8089.8At5g19540832074unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POBS.X.H.G.
0.7184.2At5g13720831217-F:unknown;P:unknown;C:chloroplast, chloroplast inner membrane, chloroplast envelope;BOPAS.X.H.G.
0.6982.9At1g02475839236-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOPS.X.H.G.
0.6882.2At1g28140839708unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPMOS.X.H.G.
0.6882.2At3g58010824970unknown proteinF:unknown;P:biological_process unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast, plastoglobule;PFOS.X.H.G.
0.6781.6At4g25650828670ACD1-LIKE (ACD1-LIKE)Similar to ACD1. Leaves of antisense ACD1-like plants turn yellow in darkness like wild-type whereas antisense ACD1 plants remain dark after five days of dark treatment.S.X.H.G.
0.6680.1At1g54520841894unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPOMS.X.H.G.
0.6579.6At5g02790831798In2-1 protein, putativeF:unknown;P:response to cadmium ion;C:unknown;PBMOFAS.X.H.G.
0.6478.9At5g48590834916unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
30.499.7GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
29.599.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
28.999.7GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
28.399.7GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
26.499.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
26.099.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
23.899.6GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
23.399.6GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
22.899.6GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
22.599.6GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.019e-238At2g343572745580bindingF:binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVC.G.S.X.
0.023e-136At3g26350822239-F:unknown;P:unknown;C:chloroplast;MPFOVBAC.G.S.X.
0.023e-136At2g28810817430Dof-type zinc finger domain-containing proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;POMFBC.G.S.X.
0.021e+034At5g60990836220DEAD/DEAH box helicase, putative (RH10)F:helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding;P:unknown;C:cellular_component unknown;BOMFPAVC.G.S.X.
0.031e+034At5g46620834705unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.011e+034At5g19220832042APL1 (ADP GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 1)Encodes the large subunit of ADP-glucose pyrophosphorylase which catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms (ApL1-4) have been identified. ApL1 is the major large subunit isoform present in leaves. Mutational analysis of APS1 suggests that APL1 and APL2 can compensate for loss of APS1 catalytic activity,suggesting both have catalytic as well as regulatory functions.C.G.S.X.
0.011e+034At4g18670827601protein binding / structural constituent of cell wallF:structural constituent of cell wall, protein binding;P:unknown;C:endomembrane system;MBPFOVAC.G.S.X.
0.021e+034At4g25130828616peptide methionine sulfoxide reductase, putativeF:peptide-methionine-(S)-S-oxide reductase activity, oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor;P:protein modification process, protein metabolic process;C:chloroplast stroma, chloroplast;OBMPFAVC.G.S.X.
0.021e+034At3g54050824572fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putativeF:fructose 1,6-bisphosphate 1-phosphatase activity, phosphoric ester hydrolase activity;P:response to cold, fructose metabolic process;C:apoplast, stromule, chloroplast stroma, chloroplast;BOMPFAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e+034Glycine maxGmaAffx.36940.1.S1_atBM085482--8e-1At1g46408AGL97 (AGAMOUS-LIKE 97)C.G.S.X.
0.032e-136Hordeum vulgareContig21816_atContig21816--3e-1At3g23610dual specificity protein phosphatase (DsPTP1)C.G.S.X.
0.033e+034Oryza sativaOsAffx.2879.1.S1_at---0C.G.S.X.
0.159e-1271Populus trichocarpaPtpAffx.46613.1.S1_s_atCV233642hypothetical protein-7e-12At4g27390unknown proteinC.G.S.X.
0.046e+032Triticum aestivumTaAffx.57450.1.S1_atCA628974--2e+0At4g27390unknown proteinC.G.S.X.
0.118e-1579Vitis vinifera1616186_atCB343650hypothetical protein LOC100257260-2e-14At4g27390unknown proteinC.G.S.X.
0.039e+030Zea maysZmAffx.406.2.A1_x_atAI670440--2e-1At1g74650MYB31 (MYB DOMAIN PROTEIN 31)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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