CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g27370

Gene name VIIIB

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g27370 828845 VIIIB member of Myosin-like proteins S.X. H.G.
0.59 74.7 At1g69280 843259 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFB S.X. H.G.
0.59 74.7 At4g31020 829229 unknown protein F:unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;OBMPFVA S.X. H.G.
0.58 73.8 At4g27980 828911 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV S.X. H.G.
0.55 70.6 At5g56780 835780 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.54 69.5 At3g09550 820112 protein binding F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA S.X. H.G.
0.54 69.5 At4g29450 829066 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.52 67.4 At1g63640 842668 kinesin motor protein-related F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:plasma membrane;MOFPBAV S.X. H.G.
0.51 66.3 At3g03090 821117 AtVGT1 (Arabidopsis thaliana vacuolar glucose transporter 1) Encodes a vacuolar membrane-localized glucose transporter that can also transport fructose. Mutations in these gene have effects on seed germination and time to flowering. S.X. H.G.
0.50 65.3 At4g20880 827836 ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2) F:unknown;P:unknown;C:nucleus;OMFBPVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
280.4 100.0 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
248.1 100.0 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
195.0 100.0 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
156.6 99.9 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
133.0 99.9 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
121.9 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
104.2 99.9 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
91.9 99.9 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
87.7 99.9 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
87.1 99.9 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.56 0 1061 At5g54280 835516 ATM2 (ARABIDOPSIS THALIANA MYOSIN 2) Type VII myosin gene C.G. S.X.
0.02 3e-14 81 At4g33200 829456 XI-I member of Myosin-like proteins C.G. S.X.
0.10 3e-14 81 At3g19960 821534 ATM1 (ARABIDOPSIS THALIANA MYOSIN 1) member of Myosin-like proteins C.G. S.X.
0.09 2e-12 75 At1g50360 841458 VIIIA member of Myosin-like proteins C.G. S.X.
0.03 2e-3 46 At1g42680 840876 myosin-related F:motor activity, ATP binding;P:biological_process unknown;C:myosin complex;MOFP C.G. S.X.
0.02 7e-3 44 At4g28710 828991 XIH member of Myosin-like proteins C.G. S.X.
0.01 4e-1 38 At5g43900 834412 MYA2 (ARABIDOPSIS MYOSIN 2) Encodes a member of the type XI myosin protein family that binds F-actin and co-localizes with actin filaments and peroxisomes. Homozygous mutants are reported to have pleiotropic effects in growth and fertility and may also be lethal. This protein is also involved in root hair growth and organelle trafficking. This protein interacts with RabC2a and RabD1 in a GTP-dependent manner. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e-5 52 Glycine max GmaAffx.2541.1.S1_at AW156543 - - 2e-44 At3g19960 ATM1 (ARABIDOPSIS THALIANA MYOSIN 1) C.G. S.X.
0.01 2e-1 38 Hordeum vulgare Contig26369_at Contig26369 - - 4e+0 At4g02620 vacuolar ATPase subunit F family protein C.G. S.X.
0.07 2e-13 79 Oryza sativa Os07g0562800 AY374514.1 - Myosin heavy chain class VIII A1 protein 3e-9 At5g54280 ATM2 (ARABIDOPSIS THALIANA MYOSIN 2) C.G. S.X.
0.25 1e-51 206 Populus trichocarpa PtpAffx.216097.1.S1_at pmrna30671 hypothetical protein - 5e-59 At5g54280 ATM2 (ARABIDOPSIS THALIANA MYOSIN 2) C.G. S.X.
0.05 2e+0 36 Triticum aestivum Ta.7621.1.S1_at BJ268570 - - 1e+0 At4g27370 VIIIB C.G. S.X.
0.01 3e-2 40 Vitis vinifera 1611194_at CD718960 - - 1e+0 At2g01818 zinc ion binding C.G. S.X.
0.07 4e-18 93 Zea mays Zm.17139.1.A1_at AI737374 myosin VIII ZMM3 - 8e-43 At3g19960 ATM1 (ARABIDOPSIS THALIANA MYOSIN 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0030048 Movement of organelles or other particles along actin filaments, or sliding of actin filaments past each other, mediated by motor proteins.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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