CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g27350

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.34 39.8 At4g27350 828843 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;BOPF S.X. H.G.
0.57 73.8 At5g56160 835715 transporter F:transporter activity;P:transport;C:cellular_component unknown;MPFOA S.X. H.G.
0.55 70.6 At1g05020 839343 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related F:phospholipid binding, clathrin binding, binding, phosphatidylinositol binding;P:clathrin coat assembly;C:clathrin coat;PMFOB S.X. H.G.
0.50 65.3 At2g29050 817453 ATRBL1 (Arabidopsis thaliana Rhomboid-like 1) F:unknown;P:unknown;C:Golgi apparatus;BOMPFA S.X. H.G.
0.46 59.8 At2g02970 814826 nucleoside phosphatase family protein / GDA1/CD39 family protein F:hydrolase activity;P:biological_process unknown;C:unknown;MFPOB S.X. H.G.
0.43 55.3 At2g46260 819234 BTB/POZ domain-containing protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MPOV S.X. H.G.
0.42 53.9 At1g12450 837802 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPMFA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
210.8 100.0 E-MEXP-285-raw-cel-440782725
152.9 99.9 E-MEXP-285-raw-cel-440782791
145.5 99.9 GSM239251 Columbia glabrous (C24) wild type pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
136.5 99.9 GSM239253 CaMV::DME pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
134.8 99.9 GSM131637 ATGE_73_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
133.0 99.9 GSM131638 ATGE_73_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
112.7 99.9 GSM131636 ATGE_73_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
109.8 99.9 GSM154506 Arabidopsis hydrated pollen grains rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
92.8 99.9 GSM239252 Columbia glabrous (C24) wild type stamen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
92.4 99.9 GSM142740 DH001_ATH1_A7-MPG1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.69 6e-68 258 At5g54240 835512 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPF C.G. S.X.
0.02 2e-3 44 At2g43010 818903 PIF4 (phytochrome interacting factor 4) Isolated as a semidominant mutation defective in red -light responses. Encodes a nuclear localized bHLH protein that interacts with active PhyB protein. Negatively regulates phyB mediated red light responses. Involved in shade avoidance response. Protein abundance is negatively regulated by PhyB. C.G. S.X.
0.03 1e-1 38 At2g25250 817063 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P C.G. S.X.
0.02 1e-1 38 At1g77690 844105 LAX3 (LIKE AUX1 3) Encodes an auxin influx carrier LAX3 (Like Aux1) that promotes lateral root emergence. Auxin-induced expression of LAX3 in turn induces a selection of cell-wall-remodelling enzymes, which are likely to promote cell separation in advance of developing lateral root primordia. C.G. S.X.
0.01 2e+0 34 Atcg00680 - - encodes for CP47, subunit of the photosystem II reaction center. C.G. S.X.
0.02 2e+0 34 At5g56430 835744 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.01 2e+0 34 At4g27370 828845 VIIIB member of Myosin-like proteins C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 6e-1 36 Glycine max GmaAffx.90909.1.S1_at CF806634 - - 6e-9 At3g62830 AUD1 C.G. S.X.
0.03 8e-1 34 Hordeum vulgare EBpi01_SQ005_J19_at EBpi01_SQ005_J19 - - 8e-1 At4g27350 unknown protein C.G. S.X.
0.03 2e-1 38 Oryza sativa Os07g0559400 BU673850 - Protein of unknown function DUF1223 family protein 7e+0 At5g25425 glycine-rich protein C.G. S.X.
0.09 2e-4 48 Populus trichocarpa PtpAffx.216092.1.S1_s_at pmrna30663 hypothetical protein - 8e-21 At5g54240 unknown protein C.G. S.X.
0.03 7e+0 32 Triticum aestivum TaAffx.65945.1.A1_at BJ215643 - - 3e-1 At3g57050 CBL (cystathionine beta-lyase) C.G. S.X.
0.02 3e-2 38 Vitis vinifera 1611586_at CF511910 hypothetical protein LOC100250956 - 1e-7 At1g06130 GLX2-4 (glyoxalase 2-4) C.G. S.X.
0.03 4e-2 38 Zea mays ZmAffx.1202.1.A1_at BE128848 - - 5e-2 At4g27350 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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