CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g27240

Gene name zinc finger (C2H2 type) family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.51 66.3 At4g27240 828832 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PFO S.X. H.G.
0.59 74.7 At1g67040 843024 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMF S.X. H.G.
0.58 73.8 At4g37750 829931 ANT (AINTEGUMENTA) ANT is required for control of cell proliferation and encodes a putative transcriptional regulator similar to AP2. Loss of function alleles have reduced fertility, abnormal ovules and abnormal lateral organs. Expressed specifically in the chalaza and in floral organ primordia. S.X. H.G.
0.52 67.4 At3g02210 821245 COBL1 (COBRA-LIKE PROTEIN 1 PRECURSOR) F:unknown;P:biological_process unknown;C:anchored to membrane;P S.X. H.G.
0.51 66.3 At2g26330 817173 ER (ERECTA) Homologous to receptor protein kinases. Involved in specification of organs originating from the shoot apical meristem. Contains a cytoplasmic protein kinase catalytic domain, a transmembrane region, and an extracellular leucine-rich repeat. ER has been identified as a quantitative trait locus for transpiration efficiency by influencing epidermal and mesophyll development, stomatal density and porosity of leaves. It has been implicated in resistance to the bacterium Ralstonia solanacearum and to the necrotrophic fungus Plectosphaerella cucumerina. Together with ERL1 and ERL2, ER governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. S.X. H.G.
0.47 61.2 At3g61310 825303 DNA-binding family protein F:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMFOB S.X. H.G.
0.44 57.2 At3g17680 821035 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBF S.X. H.G.
0.42 53.9 At2g43800 818984 formin homology 2 domain-containing protein / FH2 domain-containing protein F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:plasma membrane;MPFOBVA S.X. H.G.
0.41 52.4 At1g44760 841040 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:unknown;PMO S.X. H.G.
0.38 46.7 At3g05470 819712 formin homology 2 domain-containing protein / FH2 domain-containing protein F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:endomembrane system;MPOFVBA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
144.6 99.9 GSM133756 Lindsey_1-10_heart-stage-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
105.2 99.9 GSM133770 Lindsey_1-22_torpedo-apical_Rep4_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
90.5 99.9 GSM133755 Lindsey_1-7_heart-stage-cotyledon_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
86.0 99.9 GSM311284 Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
60.4 99.8 GSM133767 Lindsey_1-19_torpedo-basal_Rep4_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
52.8 99.8 E-ATMX-33-raw-cel-1562596103
51.2 99.8 GSM133763 Lindsey_1-15_torpedo-cotyledon_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
40.8 99.8 E-ATMX-33-raw-cel-1562596241
39.6 99.8 GSM311283 Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
35.7 99.7 E-ATMX-33-raw-cel-1562596197
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.43 1e-76 287 At5g54630 835552 zinc finger protein-related F:transcription factor activity;P:regulation of transcription;C:intracellular;PFMO C.G. S.X.
0.03 3e-3 44 At4g11430 826747 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOBVA C.G. S.X.
0.01 1e-2 42 At1g12040 837756 LRX1 (LEUCINE-RICH REPEAT/EXTENSIN 1) encodes a a chimeric leucine-rich repeat/extensin protein that regulates root hair morphogenesis and elongation. Null mutants develop root hairs that frequently abort, swell, or branch. Gene is expressed in root hair cells and protein is specifically localized in the wall of the hair proper. C.G. S.X.
0.01 1e-2 42 At1g62440 842542 LRX2 (LEUCINE-RICH REPEAT/EXTENSIN 2) encodes a paralog of LRX1 (LEUCINE-RICH REPEAT/EXTENSIN 1) which acts synergistically with LRX1 in root hair cell morphogenesis. C.G. S.X.
0.02 4e-2 40 At4g28270 828942 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MPFOV C.G. S.X.
0.01 2e-1 38 At5g37630 833741 EMB2656 (EMBRYO DEFECTIVE 2656) F:binding;P:embryonic development ending in seed dormancy, mitotic chromosome condensation;C:cellular_component unknown;MFOPB C.G. S.X.
0.01 2e-1 38 At4g39850 830144 PXA1 (PEROXISOMAL ABC TRANSPORTER 1) Encodes a peroxisomal protein of the ATP binding cassette (ABC) transporter class (PMP subfamily) with significant identity to the human X-linked adrenoleukodystrophy protein (ALDP). The gene product promotes germination and represses embryo dormancy. ABI3, ABA1, FUS3 and LEC1 are epistatic to this gene. Mutants accumulate fatty acyl CoA suggesting a defect in uptake of fatty acyl CoA into the peroxisome. C.G. S.X.
0.01 2e-1 38 At2g37035 818279 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO C.G. S.X.
0.02 2e-1 38 At1g74010 843739 strictosidine synthase family protein F:strictosidine synthase activity;P:biosynthetic process;C:plant-type cell wall;PMBOA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.21 6e-11 69 Glycine max GmaAffx.86286.1.S1_at CA799585 - - 2e-11 At4g27240 zinc finger (C2H2 type) family protein C.G. S.X.
0.02 3e-1 36 Hordeum vulgare Contig64_at Contig64 - - 2e-2 At4g39260 GR-RBP8 C.G. S.X.
0.05 5e-3 44 Oryza sativa Os.37921.2.S1_at - - - 0 C.G. S.X.
0.10 4e-9 63 Populus trichocarpa PtpAffx.211170.1.S1_x_at pmrna21959 hypothetical protein - 2e-19 At5g54630 zinc finger protein-related C.G. S.X.
0.03 2e-1 38 Triticum aestivum TaAffx.118607.1.S1_s_at BJ236275 - - 3e-1 At5g37550 unknown protein C.G. S.X.
0.02 8e-1 34 Vitis vinifera 1607753_at CA816321 hypothetical protein LOC100263239 - 1e-6 At1g65230 unknown protein C.G. S.X.
0.02 1e+0 34 Zea mays Zm.8015.1.A1_at CB816000 hypothetical protein LOC100278997 - 6e-2 At2g41470 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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