Gene omics information

Query gene ID At4g27240
Gene name zinc finger (C2H2 type) family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5166.3At4g27240828832zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PFOS.X.H.G.
0.5974.7At1g67040843024unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFS.X.H.G.
0.5873.8At4g37750829931ANT (AINTEGUMENTA)ANT is required for control of cell proliferation and encodes a putative transcriptional regulator similar to AP2. Loss of function alleles have reduced fertility, abnormal ovules and abnormal lateral organs. Expressed specifically in the chalaza and in floral organ primordia.S.X.H.G.
0.5267.4At3g02210821245COBL1 (COBRA-LIKE PROTEIN 1 PRECURSOR)F:unknown;P:biological_process unknown;C:anchored to membrane;PS.X.H.G.
0.5166.3At2g26330817173ER (ERECTA)Homologous to receptor protein kinases. Involved in specification of organs originating from the shoot apical meristem. Contains a cytoplasmic protein kinase catalytic domain, a transmembrane region, and an extracellular leucine-rich repeat. ER has been identified as a quantitative trait locus for transpiration efficiency by influencing epidermal and mesophyll development, stomatal density and porosity of leaves. It has been implicated in resistance to the bacterium Ralstonia solanacearum and to the necrotrophic fungus Plectosphaerella cucumerina. Together with ERL1 and ERL2, ER governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes.S.X.H.G.
0.4761.2At3g61310825303DNA-binding family proteinF:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMFOBS.X.H.G.
0.4457.2At3g17680821035-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBFS.X.H.G.
0.4253.9At2g43800818984formin homology 2 domain-containing protein / FH2 domain-containing proteinF:actin binding;P:cellular component organization, actin cytoskeleton organization;C:plasma membrane;MPFOBVAS.X.H.G.
0.4152.4At1g44760841040universal stress protein (USP) family proteinF:molecular_function unknown;P:response to stress;C:unknown;PMOS.X.H.G.
0.3846.7At3g05470819712formin homology 2 domain-containing protein / FH2 domain-containing proteinF:actin binding;P:cellular component organization, actin cytoskeleton organization;C:endomembrane system;MPOFVBAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
144.699.9GSM133756Lindsey_1-10_heart-stage-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
105.299.9GSM133770Lindsey_1-22_torpedo-apical_Rep4_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
90.599.9GSM133755Lindsey_1-7_heart-stage-cotyledon_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
86.099.9GSM311284Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
60.499.8GSM133767Lindsey_1-19_torpedo-basal_Rep4_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
52.899.8E-ATMX-33-raw-cel-1562596103
51.299.8GSM133763Lindsey_1-15_torpedo-cotyledon_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
40.899.8E-ATMX-33-raw-cel-1562596241
39.699.8GSM311283Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
35.799.7E-ATMX-33-raw-cel-1562596197
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.431e-76287At5g54630835552zinc finger protein-relatedF:transcription factor activity;P:regulation of transcription;C:intracellular;PFMOC.G.S.X.
0.033e-344At4g11430826747hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOBVAC.G.S.X.
0.011e-242At1g12040837756LRX1 (LEUCINE-RICH REPEAT/EXTENSIN 1)encodes a a chimeric leucine-rich repeat/extensin protein that regulates root hair morphogenesis and elongation. Null mutants develop root hairs that frequently abort, swell, or branch. Gene is expressed in root hair cells and protein is specifically localized in the wall of the hair proper.C.G.S.X.
0.011e-242At1g62440842542LRX2 (LEUCINE-RICH REPEAT/EXTENSIN 2)encodes a paralog of LRX1 (LEUCINE-RICH REPEAT/EXTENSIN 1) which acts synergistically with LRX1 in root hair cell morphogenesis.C.G.S.X.
0.024e-240At4g28270828942zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MPFOVC.G.S.X.
0.012e-138At5g37630833741EMB2656 (EMBRYO DEFECTIVE 2656)F:binding;P:embryonic development ending in seed dormancy, mitotic chromosome condensation;C:cellular_component unknown;MFOPBC.G.S.X.
0.012e-138At4g39850830144PXA1 (PEROXISOMAL ABC TRANSPORTER 1)Encodes a peroxisomal protein of the ATP binding cassette (ABC) transporter class (PMP subfamily) with significant identity to the human X-linked adrenoleukodystrophy protein (ALDP). The gene product promotes germination and represses embryo dormancy. ABI3, ABA1, FUS3 and LEC1 are epistatic to this gene. Mutants accumulate fatty acyl CoA suggesting a defect in uptake of fatty acyl CoA into the peroxisome.C.G.S.X.
0.012e-138At2g37035818279unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOC.G.S.X.
0.022e-138At1g74010843739strictosidine synthase family proteinF:strictosidine synthase activity;P:biosynthetic process;C:plant-type cell wall;PMBOAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.216e-1169Glycine maxGmaAffx.86286.1.S1_atCA799585--2e-11At4g27240zinc finger (C2H2 type) family proteinC.G.S.X.
0.023e-136Hordeum vulgareContig64_atContig64--2e-2At4g39260GR-RBP8C.G.S.X.
0.055e-344Oryza sativaOs.37921.2.S1_at---0C.G.S.X.
0.104e-963Populus trichocarpaPtpAffx.211170.1.S1_x_atpmrna21959hypothetical protein-2e-19At5g54630zinc finger protein-relatedC.G.S.X.
0.032e-138Triticum aestivumTaAffx.118607.1.S1_s_atBJ236275--3e-1At5g37550unknown proteinC.G.S.X.
0.028e-134Vitis vinifera1607753_atCA816321hypothetical protein LOC100263239-1e-6At1g65230unknown proteinC.G.S.X.
0.021e+034Zea maysZm.8015.1.A1_atCB816000hypothetical protein LOC100278997-6e-2At2g41470unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
SGO:0045449Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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