CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g27230

Gene name HTA2 (histone H2A)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.32 35.7 At4g27230 828831 HTA2 (histone H2A) Encodes HTA2, a histone H2A protein. S.X. H.G.
0.57 73.8 At1g07790 837293 HTB1 Encodes a histone 2B (H2B) protein. S.X. H.G.
0.57 73.8 At3g20670 821614 HTA13 Encodes HTA13, a histone H2A protein. S.X. H.G.
0.50 65.3 At5g59690 836090 histone H4 F:DNA binding;P:nucleosome assembly;C:thylakoid;MOPFV S.X. H.G.
0.33 38.1 At1g51060 841528 HTA10 Encodes HTA10, a histone H2A protein. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
69.3 99.9 GSM133759 Lindsey_1-9_heart-stage-cotyledon_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
34.7 99.7 GSM133755 Lindsey_1-7_heart-stage-cotyledon_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
30.2 99.7 GSM133760 Lindsey_1-12_heart-stage-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
26.4 99.7 GSM133781 Lindsey_1-6_globular-basal_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
24.2 99.6 GSM133756 Lindsey_1-10_heart-stage-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
12.2 99.3 E-MEXP-1474-raw-cel-1593932705
11.6 99.3 E-MEXP-682-raw-cel-922397713
11.0 99.2 E-MEXP-1797-raw-cel-1669768084
10.6 99.2 E-MEXP-1474-raw-cel-1593932673
10.2 99.2 E-MEXP-1474-raw-cel-1593932513
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.82 1e-98 359 At5g54640 835553 RAT5 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 5) Isolated from T-DNA insertion line, the rat5 mutant is deficient in T-DNA integration. Encodes histone2A protein. C.G. S.X.
0.62 6e-54 210 At3g20670 821614 HTA13 Encodes HTA13, a histone H2A protein. C.G. S.X.
0.54 9e-53 206 At1g54690 841910 GAMMA-H2AX (GAMMA HISTONE VARIANT H2AX) Encodes HTA3, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation, rapid accumulation of phosphorylated H2AX (γ-H2AX) occurs around the break site. H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse γ-H2AX foci throughout the chromatin. However, their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S, no γ-H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear, there is an equally swift accumulation of γ-H2AX to a maximum of >50 diffuse foci. The level of γH2AX then remains constant for a further 13 h before undergoing a gradual decrease to 10�20 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin. C.G. S.X.
0.61 9e-53 206 At1g51060 841528 HTA10 Encodes HTA10, a histone H2A protein. C.G. S.X.
0.52 2e-44 178 At1g08880 837409 H2AXA Encodes HTA5, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation, rapid accumulation of phosphorylated H2AX (γ-H2AX) occurs around the break site. H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse γ-H2AX foci throughout the chromatin. However, their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S, no γ-H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear, there is an equally swift accumulation of γ-H2AX to a maximum of >50 diffuse foci. The level of γH2AX then remains constant for a further 13 h before undergoing a gradual decrease to 10�20 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin. C.G. S.X.
0.27 1e-24 113 At5g27670 832829 HTA7 (HISTONE H2A 7) Encodes HTA7, a histone H2A protein. C.G. S.X.
0.20 6e-17 87 At5g02560 831891 HTA12 Encodes HTA12, a histone H2A protein. C.G. S.X.
0.15 2e-16 85 At5g59870 836109 HTA6 Encodes HTA6, a histone H2A protein. C.G. S.X.
0.02 8e-1 34 At5g44480 834475 DUR (DEFECTIVE UGE IN ROOT) mutant has Altered lateral root; UDP Glucose Epimerase C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.42 4e-34 145 Glycine max Gma.17619.1.S1_at CD405083 - - 2e-52 At3g20670 HTA13 C.G. S.X.
0.34 5e-28 123 Hordeum vulgare Contig321_at Contig321 - - 2e-27 At4g27230 HTA2 (histone H2A) C.G. S.X.
0.28 2e-30 133 Oryza sativa Os07g0545400 AK059228.1 - Protein H2A 4e-7 At5g54640 RAT5 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 5) C.G. S.X.
0.49 6e-61 234 Populus trichocarpa Ptp.2600.1.S1_s_at BU831472 - - 8e-61 At4g27230 HTA2 (histone H2A) C.G. S.X.
0.27 3e-9 61 Triticum aestivum TaAffx.128828.1.A1_at CK212400 - - 7e-9 At4g27230 HTA2 (histone H2A) C.G. S.X.
0.35 5e-27 119 Vitis vinifera 1622008_at CB973055 hypothetical protein LOC100251194 - 1e-25 At1g51060 HTA10 C.G. S.X.
0.34 5e-28 123 Zea mays Zm.4862.1.S1_a_at CF629721 hypothetical protein LOC100273666 - 2e-27 At4g27230 HTA2 (histone H2A) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006334 The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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