Gene omics information

Query gene ID At4g27230
Gene name HTA2 (histone H2A)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3235.7At4g27230828831HTA2 (histone H2A)Encodes HTA2, a histone H2A protein.S.X.H.G.
0.5773.8At1g07790837293HTB1Encodes a histone 2B (H2B) protein.S.X.H.G.
0.5773.8At3g20670821614HTA13Encodes HTA13, a histone H2A protein.S.X.H.G.
0.5065.3At5g59690836090histone H4F:DNA binding;P:nucleosome assembly;C:thylakoid;MOPFVS.X.H.G.
0.3338.1At1g51060841528HTA10Encodes HTA10, a histone H2A protein.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
69.399.9GSM133759Lindsey_1-9_heart-stage-cotyledon_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
34.799.7GSM133755Lindsey_1-7_heart-stage-cotyledon_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
30.299.7GSM133760Lindsey_1-12_heart-stage-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
26.499.7GSM133781Lindsey_1-6_globular-basal_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
24.299.6GSM133756Lindsey_1-10_heart-stage-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
12.299.3E-MEXP-1474-raw-cel-1593932705
11.699.3E-MEXP-682-raw-cel-922397713
11.099.2E-MEXP-1797-raw-cel-1669768084
10.699.2E-MEXP-1474-raw-cel-1593932673
10.299.2E-MEXP-1474-raw-cel-1593932513
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.821e-98359At5g54640835553RAT5 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 5)Isolated from T-DNA insertion line, the rat5 mutant is deficient in T-DNA integration. Encodes histone2A protein.C.G.S.X.
0.626e-54210At3g20670821614HTA13Encodes HTA13, a histone H2A protein.C.G.S.X.
0.549e-53206At1g54690841910GAMMA-H2AX (GAMMA HISTONE VARIANT H2AX)Encodes HTA3, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation, rapid accumulation of phosphorylated H2AX (γ-H2AX) occurs around the break site. H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse γ-H2AX foci throughout the chromatin. However, their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S, no γ-H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear, there is an equally swift accumulation of γ-H2AX to a maximum of >50 diffuse foci. The level of γH2AX then remains constant for a further 13 h before undergoing a gradual decrease to 1020 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin.C.G.S.X.
0.619e-53206At1g51060841528HTA10Encodes HTA10, a histone H2A protein.C.G.S.X.
0.522e-44178At1g08880837409H2AXAEncodes HTA5, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation, rapid accumulation of phosphorylated H2AX (γ-H2AX) occurs around the break site. H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse γ-H2AX foci throughout the chromatin. However, their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S, no γ-H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear, there is an equally swift accumulation of γ-H2AX to a maximum of >50 diffuse foci. The level of γH2AX then remains constant for a further 13 h before undergoing a gradual decrease to 1020 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin.C.G.S.X.
0.271e-24113At5g27670832829HTA7 (HISTONE H2A 7)Encodes HTA7, a histone H2A protein.C.G.S.X.
0.206e-1787At5g02560831891HTA12Encodes HTA12, a histone H2A protein.C.G.S.X.
0.152e-1685At5g59870836109HTA6Encodes HTA6, a histone H2A protein.C.G.S.X.
0.028e-134At5g44480834475DUR (DEFECTIVE UGE IN ROOT)mutant has Altered lateral root; UDP Glucose EpimeraseC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.424e-34145Glycine maxGma.17619.1.S1_atCD405083--2e-52At3g20670HTA13C.G.S.X.
0.345e-28123Hordeum vulgareContig321_atContig321--2e-27At4g27230HTA2 (histone H2A)C.G.S.X.
0.282e-30133Oryza sativaOs07g0545400AK059228.1-Protein H2A4e-7At5g54640RAT5 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 5)C.G.S.X.
0.496e-61234Populus trichocarpaPtp.2600.1.S1_s_atBU831472--8e-61At4g27230HTA2 (histone H2A)C.G.S.X.
0.273e-961Triticum aestivumTaAffx.128828.1.A1_atCK212400--7e-9At4g27230HTA2 (histone H2A)C.G.S.X.
0.355e-27119Vitis vinifera1622008_atCB973055hypothetical protein LOC100251194-1e-25At1g51060HTA10C.G.S.X.
0.345e-28123Zea maysZm.4862.1.S1_a_atCF629721hypothetical protein LOC100273666-2e-27At4g27230HTA2 (histone H2A)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0006334The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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