CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g27140

Gene name 2S seed storage protein 1 / 2S albumin storage protein / NWMU1-2S albumin 1

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g27140 828822 2S seed storage protein 1 / 2S albumin storage protein / NWMU1-2S albumin 1 F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;PMO S.X. H.G.
1.00 100.0 At4g27150 828823 2S seed storage protein 2 / 2S albumin storage protein / NWMU2-2S albumin 2 F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;PO S.X. H.G.
0.95 97.0 At4g27170 828825 2S seed storage protein 4 / 2S albumin storage protein / NWMU2-2S albumin 4 F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;PO S.X. H.G.
0.88 94.0 At1g03880 839383 CRU2 (CRUCIFERIN 2) Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. S.X. H.G.
0.80 89.8 At4g27160 828824 AT2S3 F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;PO S.X. H.G.
0.77 88.0 At1g03890 839379 cupin family protein F:nutrient reservoir activity;P:biological_process unknown;C:endomembrane system;PBMO S.X. H.G.
0.77 88.0 At5g07190 830610 ATS3 (ARABIDOPSIS THALIANA SEED GENE 3) Gene is expressed preferentially in the embryo and encodes a unique protein of unknown function. S.X. H.G.
0.76 87.4 At4g26740 828781 ATS1 (ARABIDOPSIS THALIANA SEED GENE 1) Gene is expressed preferentially in the embryo, has similarity to a rice ABA-responsive gene, EFA27. S.X. H.G.
0.73 85.5 At4g25140 828617 OLEO1 (OLEOSIN 1) Encodes oleosin1, a protein found in oil bodies, involved in seed lipid accumulation. Suppression of OLEO1 (and OLEO2) resulted in an aberrant phenotype of embryo cells that contain unusually large oilbodies that are not normally observed in seeds. Changes in the size of oilbodies caused disruption of storage organelles, altering accumulation of lipids and proteins and causing delay in germination. Functions in freezing tolerance of seeds. S.X. H.G.
0.70 83.5 At3g27660 822388 OLEO4 (OLEOSIN 4) Encodes oleosin4 (Plant Cell, 2006, 18:1961), a protein found in oil bodies, involved in seed lipid accumulation. Functions in freezing tolerance of seeds. Note: also referred to as OLE3 in Plant Journal 2008, 55:798. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
274.5 100.0 GSM10451 WT Mature Green Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
244.9 100.0 GSM10453 WT Mature Green Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
242.0 100.0 GSM133817 Yang_1-2_old-pod_Rep1_ATH1 GSE5736 To identify changes in gene expression during silique senescence in Arabidopsis thaliana
230.5 100.0 GSM10456 WT Post-Mature Green Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
216.6 100.0 GSM10454 WT Post-Mature Green Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
206.3 100.0 GSM10481 lec1-1 Mature Green Seed 1 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
199.7 100.0 GSM10483 lec1-1 Post-Mature Green Seed 1 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
175.1 100.0 GSM131704 ATGE_83_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
166.3 100.0 GSM305282 estradiol induced, biological replicate 1 GSE12137 LEAFY COTYLEDON1 is a key regulator of fatty acid biosynthesis in Arabidopsis thaliana
154.9 99.9 GSM131708 ATGE_84_D GSE5634 AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.81 8e-60 230 At4g27170 828825 2S seed storage protein 4 / 2S albumin storage protein / NWMU2-2S albumin 4 F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;PO C.G. S.X.
0.74 5e-55 214 At4g27150 828823 2S seed storage protein 2 / 2S albumin storage protein / NWMU2-2S albumin 2 F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;PO C.G. S.X.
0.67 3e-50 198 At4g27160 828824 AT2S3 F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;PO C.G. S.X.
0.10 1e-6 54 At5g54740 835563 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding, nutrient reservoir activity;P:lipid transport, pollen development;C:endomembrane system;PO C.G. S.X.
0.02 2e-1 36 At5g54800 835570 GPT1 glucose6-Phosphate/phosphate transporter 1 C.G. S.X.
0.03 2e-1 36 At4g03950 825705 glucose-6-phosphate/phosphate translocator, putative F:glucose-6-phosphate transmembrane transporter activity, glucose transmembrane transporter activity;P:hexose phosphate transport;C:unknown;PMOFB C.G. S.X.
0.03 2e-1 36 At3g17520 821017 late embryogenesis abundant domain-containing protein / LEA domain-containing protein F:unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;MOBFPVA C.G. S.X.
0.02 2e-1 36 At3g26310 822235 CYP71B35 putative cytochrome P450 C.G. S.X.
0.01 9e-1 34 At2g20190 816539 CLASP (CLIP-ASSOCIATED PROTEIN) Encodes a microtubule-associated protein that is involved in both cell division and cell expansion. It likely promotes microtubule stability. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-1 36 Glycine max HgAffx.18658.1.S1_at CA940522 - - 4e-1 At1g54120 unknown protein C.G. S.X.
0.05 8e-3 40 Hordeum vulgare baak1o23_s_at baak1o23 - - 1e+1 At4g18070 unknown protein C.G. S.X.
0.04 3e-2 40 Oryza sativa Os02g0731801 9630.m04889 - - 1e-2 At4g27140 2S seed storage protein 1 / 2S albumin storage protein / NWMU1-2S albumin 1 C.G. S.X.
0.03 1e+0 34 Populus trichocarpa PtpAffx.131756.1.S1_at AY515152.1 hypothetical protein - 6e-15 At1g65480 FT (FLOWERING LOCUS T) C.G. S.X.
0.03 1e+0 34 Triticum aestivum TaAffx.107836.1.S1_at CA708176 - - 2e-2 At5g18790 ribosomal protein L33 family protein C.G. S.X.
0.04 4e+0 30 Vitis vinifera 1610447_at CF205721.1 hypothetical protein LOC100241574 - 2e-24 At3g08510 ATPLC2 (PHOSPHOLIPASE C 2) C.G. S.X.
0.04 2e+0 32 Zea mays Zm.13325.1.S1_at BQ279643 - - 3e+0 At4g27140 2S seed storage protein 1 / 2S albumin storage protein / NWMU1-2S albumin 1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006869 The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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