CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g27030

Gene name small conjugating protein ligase

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At4g27030 828811 small conjugating protein ligase F:small conjugating protein ligase activity;P:regulation of protein metabolic process, post-translational protein modification;C:chloroplast;MOPBV S.X. H.G.
0.89 94.6 At5g42760 834285 - F:unknown;P:biological_process unknown;C:cellular_component unknown;BOAPMF S.X. H.G.
0.57 73.8 At3g56290 824796 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.50 65.3 At1g64500 842758 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;PMBOF S.X. H.G.
0.43 55.3 At4g00050 828175 UNE10 (unfertilized embryo sac 10) F:transcription factor activity, DNA binding;P:double fertilization forming a zygote and endosperm, regulation of transcription;C:nucleus;PMFO S.X. H.G.
0.23 19.3 At1g78510 844187 SPS1 (solanesyl diphosphate synthase 1) Encodes a protein with solanesyl diphosphate synthase activity. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
29.5 99.7 E-MEXP-557-raw-cel-879731502
29.0 99.7 GSM297382 At.StarchSD.WTSS3.SS3R1L1 GSE11708 Global gene expression in Atss3 mutant and WT over short day diurnal cycle
28.7 99.7 Evans_2-2_col-WT-cold_ATH1
27.9 99.7 GSM131391 AtGen_6-7211_UV-Bstress-Shoots-1.0h_Rep1 GSE5626 AtGenExpress: Stress Treatments (UV-B stress)
27.8 99.7 E-MEXP-550-raw-cel-871342418
25.6 99.7 Evans_2-8_35s-FAD3-cold_ATH1
24.4 99.6 GSM131392 AtGen_6-7212_UV-Bstress-Shoots-1.0h_Rep2 GSE5626 AtGenExpress: Stress Treatments (UV-B stress)
24.3 99.6 Evans_2-4_fab1-mut-cold_ATH1
23.8 99.6 Evans_2-10_col-aeq-cold_ATH1
23.4 99.6 E-MEXP-550-raw-cel-871342427
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.70 5e-149 527 At2g22890 816820 small conjugating protein ligase F:small conjugating protein ligase activity;P:regulation of protein metabolic process, post-translational protein modification;C:chloroplast;MOPBV C.G. S.X.
0.78 2e-139 496 At1g62190 842515 small conjugating protein ligase F:small conjugating protein ligase activity;P:regulation of protein metabolic process, post-translational protein modification;C:chloroplast;MOPBV C.G. S.X.
0.01 1e-1 38 At1g55620 842011 CLC-F (CHLORIDE CHANNEL F) Encodes a chloride channel protein that has been localized to the chloroplast and golgi apparatus. Complements yeast gef1 mutant and therefor may function to acidify the golgi lumen. C.G. S.X.
0.01 5e-1 36 At1g71830 843513 SERK1 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1) Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production. later C.G. S.X.
0.01 5e-1 36 At1g56540 842107 disease resistance protein (TIR-NBS-LRR class), putative F:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAV C.G. S.X.
0.02 2e+0 34 At5g43720 834392 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPBVA C.G. S.X.
0.01 2e+0 34 At5g07710 830664 exonuclease family protein F:exonuclease activity, nucleic acid binding;P:biological_process unknown;C:intracellular;BOP C.G. S.X.
0.03 2e+0 34 At5g03130 831922 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 3e-12 73 Glycine max Gma.12748.2.A1_at CD404896 - - 9e-13 At4g27030 small conjugating protein ligase C.G. S.X.
0.03 9e-1 34 Hordeum vulgare S0000200065E07F1_at S0000200065E07F1 - - 6e+0 At5g21274 CAM6 (CALMODULIN 6) C.G. S.X.
0.02 6e-2 40 Oryza sativa OsAffx.23389.1.S1_at - - - 0 C.G. S.X.
0.14 1e-8 61 Populus trichocarpa PtpAffx.23942.1.A1_at CV238915 hypothetical protein - 1e-8 At4g27030 small conjugating protein ligase C.G. S.X.
0.03 1e-1 38 Triticum aestivum Ta.7274.3.S1_a_at AJ612375 - - 1e-3 At1g79650 RAD23 C.G. S.X.
0.11 6e-10 63 Vitis vinifera 1613317_at CB340110 hypothetical protein LOC100257229 - 1e-9 At4g27030 small conjugating protein ligase C.G. S.X.
0.02 3e+0 32 Zea mays Zm.13427.1.S1_at AF124738.1 hypothetical protein LOC100194389 - 1e-7 At4g21520 transducin family protein / WD-40 repeat family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0006636 The chemical reactions and pathways resulting in the formation of an unsaturated fatty acid, any fatty acid containing one or more double bonds between carbon atoms.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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