CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g26740

Gene name ATS1 (ARABIDOPSIS THALIANA SEED GENE 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.64 78.9 At4g26740 828781 ATS1 (ARABIDOPSIS THALIANA SEED GENE 1) Gene is expressed preferentially in the embryo, has similarity to a rice ABA-responsive gene, EFA27. S.X. H.G.
0.93 96.4 At2g28490 817397 cupin family protein F:nutrient reservoir activity;P:biological_process unknown;C:endomembrane system;BMPOFVA S.X. H.G.
0.93 96.4 At3g27660 822388 OLEO4 (OLEOSIN 4) Encodes oleosin4 (Plant Cell, 2006, 18:1961), a protein found in oil bodies, involved in seed lipid accumulation. Functions in freezing tolerance of seeds. Note: also referred to as OLE3 in Plant Journal 2008, 55:798. S.X. H.G.
0.92 96.0 At3g22640 821835 PAP85 F:nutrient reservoir activity;P:biological_process unknown;C:plant-type cell wall;POM S.X. H.G.
0.88 94.0 At3g01570 821106 glycine-rich protein / oleosin F:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;P S.X. H.G.
0.86 93.1 At5g50600 835129 AtHSD1 (hydroxysteroid dehydrogenase 1) F:oxidoreductase activity, binding, catalytic activity;P:response to brassinosteroid stimulus, response to abscisic acid stimulus;C:endomembrane system;BOMFPAV S.X. H.G.
0.82 90.9 At4g25140 828617 OLEO1 (OLEOSIN 1) Encodes oleosin1, a protein found in oil bodies, involved in seed lipid accumulation. Suppression of OLEO1 (and OLEO2) resulted in an aberrant phenotype of embryo cells that contain unusually large oilbodies that are not normally observed in seeds. Changes in the size of oilbodies caused disruption of storage organelles, altering accumulation of lipids and proteins and causing delay in germination. Functions in freezing tolerance of seeds. S.X. H.G.
0.75 86.9 At1g73190 843653 TIP3 Moves to the Protein Storage Vacuole in a Golgi independent manner S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
381.0 100.0 E-ATMX-1-raw-cel-1112746267
292.1 100.0 E-ATMX-1-raw-cel-1112746209
274.1 100.0 GSM10456 WT Post-Mature Green Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
260.9 100.0 E-ATMX-1-raw-cel-1112746154
236.4 100.0 GSM10454 WT Post-Mature Green Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
222.1 100.0 E-ATMX-1-raw-cel-1112746095
198.7 100.0 GSM131705 ATGE_83_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
192.2 100.0 GSM131703 ATGE_83_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
176.6 100.0 GSM10451 WT Mature Green Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
172.1 100.0 GSM131706 ATGE_84_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.77 2e-95 349 At5g55240 835617 caleosin-related family protein / embryo-specific protein, putative F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;PFO C.G. S.X.
0.07 2e-2 40 At2g33380 817901 RD20 (RESPONSIVE TO DESSICATION 20) Encodes a calcium binding protein whose mRNA is induced upon treatment with NaCl, ABA and in response to dessication. mRNA expression under drought conditions is apparent particularly in leaves and flowers. C.G. S.X.
0.02 4e-1 36 At5g22590 832322 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 4e-1 36 At4g23720 828472 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P C.G. S.X.
0.02 4e-1 36 At3g25480 822132 rhodanese-like domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;P C.G. S.X.
0.03 1e+0 34 At2g38640 818446 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF C.G. S.X.
0.02 1e+0 34 At1g05310 837030 pectinesterase family protein F:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 6e-7 56 Glycine max Gma.8.1.S1_at AF004809.1 Ca+2-binding EF hand protein - 5e-7 At4g26740 ATS1 (ARABIDOPSIS THALIANA SEED GENE 1) C.G. S.X.
0.04 3e+0 32 Hordeum vulgare Contig4461_at Contig4461 caleosin 1 - 9e+0 At4g26740 ATS1 (ARABIDOPSIS THALIANA SEED GENE 1) C.G. S.X.
0.03 3e+0 34 Oryza sativa Os08g0199200 AK063127.1 - Conserved hypothetical protein 2e-1 At5g04386 unknown protein C.G. S.X.
0.19 5e-7 56 Populus trichocarpa Ptp.6973.1.S1_s_at CV257729 hypothetical protein - 1e-4 At4g26740 ATS1 (ARABIDOPSIS THALIANA SEED GENE 1) C.G. S.X.
0.07 4e-1 36 Triticum aestivum Ta.9830.1.A1_a_at BJ237316 - - 5e-1 At4g26740 ATS1 (ARABIDOPSIS THALIANA SEED GENE 1) C.G. S.X.
0.12 8e-15 79 Vitis vinifera 1620307_at CB348708 hypothetical protein LOC100264814 - 2e-10 At2g33380 RD20 (RESPONSIVE TO DESSICATION 20) C.G. S.X.
0.05 6e-4 44 Zea mays Zm.2648.1.A1_at AY104745.1 hypothetical protein LOC100216957 - 3e-3 At4g26740 ATS1 (ARABIDOPSIS THALIANA SEED GENE 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0034389 A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a lipid particle.
S GO:0009793 The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana.
N GO:0009737 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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