Gene omics information

Query gene ID At4g26740
Gene name ATS1 (ARABIDOPSIS THALIANA SEED GENE 1)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6478.9At4g26740828781ATS1 (ARABIDOPSIS THALIANA SEED GENE 1)Gene is expressed preferentially in the embryo, has similarity to a rice ABA-responsive gene, EFA27.S.X.H.G.
0.9396.4At2g28490817397cupin family proteinF:nutrient reservoir activity;P:biological_process unknown;C:endomembrane system;BMPOFVAS.X.H.G.
0.9396.4At3g27660822388OLEO4 (OLEOSIN 4)Encodes oleosin4 (Plant Cell, 2006, 18:1961), a protein found in oil bodies, involved in seed lipid accumulation. Functions in freezing tolerance of seeds. Note: also referred to as OLE3 in Plant Journal 2008, 55:798.S.X.H.G.
0.9296.0At3g22640821835PAP85F:nutrient reservoir activity;P:biological_process unknown;C:plant-type cell wall;POMS.X.H.G.
0.8894.0At3g01570821106glycine-rich protein / oleosinF:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;PS.X.H.G.
0.8693.1At5g50600835129AtHSD1 (hydroxysteroid dehydrogenase 1)F:oxidoreductase activity, binding, catalytic activity;P:response to brassinosteroid stimulus, response to abscisic acid stimulus;C:endomembrane system;BOMFPAVS.X.H.G.
0.8290.9At4g25140828617OLEO1 (OLEOSIN 1)Encodes oleosin1, a protein found in oil bodies, involved in seed lipid accumulation. Suppression of OLEO1 (and OLEO2) resulted in an aberrant phenotype of embryo cells that contain unusually large oilbodies that are not normally observed in seeds. Changes in the size of oilbodies caused disruption of storage organelles, altering accumulation of lipids and proteins and causing delay in germination. Functions in freezing tolerance of seeds.S.X.H.G.
0.7586.9At1g73190843653TIP3Moves to the Protein Storage Vacuole in a Golgi independent mannerS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
381.0100.0E-ATMX-1-raw-cel-1112746267
292.1100.0E-ATMX-1-raw-cel-1112746209
274.1100.0GSM10456WT Post-Mature Green Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
260.9100.0E-ATMX-1-raw-cel-1112746154
236.4100.0GSM10454WT Post-Mature Green Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
222.1100.0E-ATMX-1-raw-cel-1112746095
198.7100.0GSM131705ATGE_83_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
192.2100.0GSM131703ATGE_83_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
176.6100.0GSM10451WT Mature Green Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
172.1100.0GSM131706ATGE_84_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.772e-95349At5g55240835617caleosin-related family protein / embryo-specific protein, putativeF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;PFOC.G.S.X.
0.072e-240At2g33380817901RD20 (RESPONSIVE TO DESSICATION 20)Encodes a calcium binding protein whose mRNA is induced upon treatment with NaCl, ABA and in response to dessication. mRNA expression under drought conditions is apparent particularly in leaves and flowers.C.G.S.X.
0.024e-136At5g22590832322-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.024e-136At4g23720828472unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PC.G.S.X.
0.024e-136At3g25480822132rhodanese-like domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;PC.G.S.X.
0.031e+034At2g38640818446unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFC.G.S.X.
0.021e+034At1g05310837030pectinesterase family proteinF:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;MPOBFVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.186e-756Glycine maxGma.8.1.S1_atAF004809.1Ca+2-binding EF hand protein-5e-7At4g26740ATS1 (ARABIDOPSIS THALIANA SEED GENE 1)C.G.S.X.
0.043e+032Hordeum vulgareContig4461_atContig4461caleosin 1-9e+0At4g26740ATS1 (ARABIDOPSIS THALIANA SEED GENE 1)C.G.S.X.
0.033e+034Oryza sativaOs08g0199200AK063127.1-Conserved hypothetical protein2e-1At5g04386unknown proteinC.G.S.X.
0.195e-756Populus trichocarpaPtp.6973.1.S1_s_atCV257729hypothetical protein-1e-4At4g26740ATS1 (ARABIDOPSIS THALIANA SEED GENE 1)C.G.S.X.
0.074e-136Triticum aestivumTa.9830.1.A1_a_atBJ237316--5e-1At4g26740ATS1 (ARABIDOPSIS THALIANA SEED GENE 1)C.G.S.X.
0.128e-1579Vitis vinifera1620307_atCB348708hypothetical protein LOC100264814-2e-10At2g33380RD20 (RESPONSIVE TO DESSICATION 20)C.G.S.X.
0.056e-444Zea maysZm.2648.1.A1_atAY104745.1hypothetical protein LOC100216957-3e-3At4g26740ATS1 (ARABIDOPSIS THALIANA SEED GENE 1)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0034389A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a lipid particle.
SGO:0009793The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana.
NGO:0009737A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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