Gene omics information

Query gene ID At4g26590
Gene name OPT5 (OLIGOPEPTIDE TRANSPORTER 5)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7586.9At4g26590828766OPT5 (OLIGOPEPTIDE TRANSPORTER 5)oligopeptide transporterS.X.H.G.
1.00100.0At3g20210821565DELTA-VPEEncodes a vacuolar processing enzyme with caspase-1-like activity that is specifically expressed in inner integument of developing seeds. Mutants display abnormal seed coat development. It is speculated to be involved in cell death of limited cell layers, the purpose of which is to form a seed coat.S.X.H.G.
0.9296.0At1g56100842062pectinesterase inhibitor domain-containing proteinF:enzyme inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;OMFPBAVS.X.H.G.
0.9296.0At2g46960819310CYP709B1member of CYP709BS.X.H.G.
0.9195.6At1g61720842469BAN (BANYULS)Negative regulator of flavonoid biosynthesis, mutants accumulate flavonoid pigments in their seed coat, putative oxidoreductase. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium.S.X.H.G.
0.8391.4At1g71690843495unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBS.X.H.G.
0.6781.6At5g49180834977pectinesterase family proteinEncodes a putative pectin methylesterase. The gene is preferentially expressed in floral buds.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
344.2100.0GSM10480lec1-1 Cotyledon Stage Seed 2GSE1051Seed development in LEAFY COTYLEDON1 mutants
322.1100.0GSM147965lec1-1 Globular Stage Seed 1GSE1051Seed development in LEAFY COTYLEDON1 mutants
285.4100.0GSM311295Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
273.1100.0GSM10479lec1-1 Cotyledon Stage Seed 1GSE1051Seed development in LEAFY COTYLEDON1 mutants
257.0100.0E-MEXP-285-raw-cel-440783152
242.0100.0GSM10449WT Cotyledon Stage Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
238.6100.0GSM147963WT Globular Stage Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
231.1100.0E-MEXP-285-raw-cel-440783213
220.9100.0GSM147966lec1-1 Globular Stage Seed 2GSE1051Seed development in LEAFY COTYLEDON1 mutants
188.7100.0GSM10448WT Cotyledon Stage Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
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Homologous genes



Paralogous genes



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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.665e-111402At5g55930835691OPT1 (OLIGOPEPTIDE TRANSPORTER 1)oligopeptide transporterC.G.S.X.
0.033e-757At4g16370827332ATOPT3 (OLIGOPEPTIDE TRANSPORTER)Encodes an oligopeptide transporter involved in metal homeostasis.C.G.S.X.
0.041e-656At4g10770826672OPT7 (OLIGOPEPTIDE TRANSPORTER 7)oligopeptide transporterC.G.S.X.
0.057e-550At5g64410836562OPT4 (OLIGOPEPTIDE TRANSPORTER 4)oligopeptide transporterC.G.S.X.
0.077e-550At4g27730828887OPT6 (OLIGOPEPTIDE TRANSPORTER 1)oligopeptide transporterC.G.S.X.
0.033e-448At5g53510835433ATOPT9 (ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 9)oligopeptide transporterC.G.S.X.
0.017e-240At5g64920836616CIP8 (COP1-INTERACTING PROTEIN 8)Encodes a RING-H2 protein that interacts with the RING finger domain of COP1. CIP8 exhibits a strong interaction with the E2 ubiquitin conjugating enzyme AtUBC8 through its N-terminal domain and promotes ubiquitination in an E2-dependent fashion in vitro. It is possible that the AtUBC8-CIP8 module might interact with COP1 in vivo, thereby participating in proteasome-mediated degradation of HY5.C.G.S.X.
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Orthologous genes



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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e-346Glycine maxGmaAffx.50740.1.S1_atBM085219--1e-8At5g55930OPT1 (OLIGOPEPTIDE TRANSPORTER 1)C.G.S.X.
0.011e-138Hordeum vulgareHVSMEf0008B14r2_s_atHVSMEf0008B14r2--2e-1At1g28335LCR31 (Low-molecular-weight cysteine-rich 31)C.G.S.X.
0.062e-1069Oryza sativaOs08g0320200AK072608.1-Oligopeptide transporter OPT superfamily protein1e-9At5g55930OPT1 (OLIGOPEPTIDE TRANSPORTER 1)C.G.S.X.
0.177e-1583Populus trichocarpaPtpAffx.201296.1.S1_s_atpmrna2575oligopeptide transporter OPT family /// oligopeptide transporter OPT family-5e-15At4g26590OPT5 (OLIGOPEPTIDE TRANSPORTER 5)C.G.S.X.
0.047e-240Triticum aestivumTa.1984.1.S1_atBG604569--5e-32At4g16370ATOPT3 (OLIGOPEPTIDE TRANSPORTER)C.G.S.X.
0.025e-342Vitis vinifera1613916_atCF404702hypothetical protein LOC100250922-1e-24At5g64410OPT4 (OLIGOPEPTIDE TRANSPORTER 4)C.G.S.X.
0.023e-240Zea maysZm.16913.1.S1_atBQ619268GT1 protein-2e-24At4g16370ATOPT3 (OLIGOPEPTIDE TRANSPORTER)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0006857The directed movement of oligopeptides into, out of, within or between cells. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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