CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g26200

Gene name ACS7

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g26200 828726 ACS7 Member of a family of proteins in Arabidopsis that encode 1-Amino-cyclopropane-1-carboxylate synthase, an enzyme involved in ethylene biosynthesis. Not expressed in response to IAA. S.X. H.G.
0.91 95.6 At1g61460 842440 S-locus protein kinase, putative F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:unknown;MPOBFVA S.X. H.G.
0.91 95.6 At5g66620 836794 DAR6 (DA1-RELATED PROTEIN 6) F:zinc ion binding;P:unknown;C:unknown;MOBFPVA S.X. H.G.
0.89 94.6 At2g20350 816554 AP2 domain-containing transcription factor, putative encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. S.X. H.G.
0.88 94.0 At1g30370 839917 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:unknown;PBOFMV S.X. H.G.
0.88 94.0 At1g33760 840267 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. S.X. H.G.
0.87 93.5 At5g66640 836796 DAR3 (DA1-RELATED PROTEIN 3) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBF S.X. H.G.
0.86 93.1 At1g22810 838887 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. S.X. H.G.
0.86 93.1 At2g22760 816806 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFOMA S.X. H.G.
0.85 92.4 At3g23220 821900 DNA binding / transcription factor encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
558.2 100.0 E-MEXP-807-raw-cel-1173273170
487.3 100.0 E-MEXP-807-raw-cel-1173273223
413.1 100.0 E-MEXP-807-raw-cel-1173273060
342.7 100.0 E-MEXP-807-raw-cel-1173273116
265.0 100.0 E-MEXP-807-raw-cel-1173273196
237.3 100.0 E-MEXP-807-raw-cel-1173273144
223.4 100.0 E-MEXP-807-raw-cel-1173273088
221.7 100.0 E-MEXP-807-raw-cel-1173272948
206.1 100.0 E-MEXP-807-raw-cel-1173273252
152.5 99.9 GSM142904 WW002_ATH1_A1-willa-CON-REP2 GSE6181 Assembly of the cell wall pectic matrix.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.09 1e-14 81 At4g11280 826730 ACS6 (1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID (ACC) SYNTHASE 6) encodes a a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family C.G. S.X.
0.10 2e-10 67 At4g37770 829933 ACS8 Encodes an auxin inducible ACC synthase. C.G. S.X.
0.05 7e-7 56 At3g49700 824132 ACS9 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 9) encodes a a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family. Mutants produce elevated levels of ethylene as etiolated seedlings. C.G. S.X.
0.08 1e-5 52 At5g65800 836709 ACS5 (ACC SYNTHASE 5) 1-aminocyclopropane-1-carboxylate synthase (ACS) is encoded by a multigene family consisting of at least five members whose expression is induced by hormones, developmental signals, and protein synthesis inhibition. C.G. S.X.
0.08 1e-5 52 At1g01480 837082 ACS2 a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family, isolated from a flower-specific cDNA library. C.G. S.X.
0.10 1e-2 42 At3g61510 825324 ACS1 (ACC SYNTHASE 1) Encodes a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family. The gene is transcriptionally active but enzymatically inactive. The predicted amino-acid sequence of ACS1 is missing the highly conserved tripeptide, Thr-Asn-Pro (TNP), between Ile204 and Ser205. Introduction of TNP into ACS1 restores the ACS activity. C.G. S.X.
0.07 4e-2 40 At5g28360 832921 ACS3 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE LIKE PSEUDOGENE) a pseudogene belonging to the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family. Transcript has not been detected. C.G. S.X.
0.01 4e-2 40 At2g19410 816460 protein kinase family protein F:ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, protein ubiquitination;C:ubiquitin ligase complex;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-3 46 Glycine max Gma.1332.1.S1_x_at BI970666 ACC synthase - 2e-8 At4g11280 ACS6 (1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID (ACC) SYNTHASE 6) C.G. S.X.
0.02 2e-2 40 Hordeum vulgare Contig19820_at Contig19820 - - 3e+0 At5g67420 LBD37 (LOB DOMAIN-CONTAINING PROTEIN 37) C.G. S.X.
0.12 1e-6 56 Oryza sativa Os01g0192900 NM_189686.1 - ACC synthase (EC 4.1.1.14) (Fragment) 8e-7 At4g26200 ACS7 C.G. S.X.
0.35 7e-14 79 Populus trichocarpa PtpAffx.206387.1.S1_at pmrna12687 1-aminocyclopropane-1-carboxylate - 5e-14 At4g26200 ACS7 C.G. S.X.
0.02 2e-1 38 Triticum aestivum Ta.24076.1.S1_at CA732597 1-aminocyclopropane-1-carboxylate synthase - 8e+0 At5g28360 ACS3 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE LIKE PSEUDOGENE) C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1620131_at CF415368 - - 2e-10 At3g01940 unknown protein C.G. S.X.
0.02 5e+0 32 Zea mays ZmAffx.656.1.A1_at AI715084 - - 8e-1 At5g57310 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0009693 The chemical reactions and pathways resulting in the formation of ethylene (C2-H4, ethene), a simple hydrocarbon gas that can function in plants as a growth regulator.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00030 Ethylene biosynthesis from methionine

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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