CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g26070

Gene name MEK1 (MAP KINASE/ ERK KINASE 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.27 26.2 At4g26070 828713 MEK1 (MAP KINASE/ ERK KINASE 1) Member of MAP Kinase Kinase. Likely functions in a stress-activated MAPK pathway. Can phosphorylate the MAPK AtMPK4, in response to stress. Gets phosphorylated by MEKK1 in response to wounding. S.X. H.G.
1.00 100.0 At1g72910 843622 disease resistance protein (TIR-NBS class), putative F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBMO S.X. H.G.
0.80 89.8 At3g04210 819576 disease resistance protein (TIR-NBS class), putative F:transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PBMO S.X. H.G.
0.73 85.5 At2g41090 818708 calmodulin-like calcium-binding protein, 22 kDa (CaBP-22) F:calcium ion binding;P:unknown;C:cellular_component unknown;MFPOBV S.X. H.G.
0.67 81.6 At2g14560 815943 LURP1 (LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA) Encodes LURP1, a member of the LURP cluster (late upregulated in response to Hyaloperonospora parasitica) which exhibits a pronounced upregulation after recognition of the pathogenic oomycte H. parasitica. LURP1 is required for full basal defense to H. parasitica and resistance to this pathogen mediated by the R-proteins RPP4 and RPP5. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
29.2 99.7 GSM134385 St.Clair_1-46_293_Est_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1 GSE5754 Expression Level Polymorphism Project (ELP) - Est
23.4 99.6 GSM134458 St.Clair_1-83_323_Mt-0_0.30mM-SA-in-0.02%-silwet_Rep2_ATH1 GSE5758 Expression Level Polymorphism Project (ELP) - Mt-0
22.9 99.6 GSM134423 St.Clair_1-120_434_Van-0_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1 GSE5756 Expression Level Polymorphism Project (ELP) - Van-0
22.5 99.6 GSM134350 St.Clair_1-11_333_Col-0_0.30mM-SA-in-0.02%-silwet_Rep2_ATH1 GSE5752 Expression Level Polymorphism Project (ELP) - Col-0
21.7 99.6 GSM134369 St.Clair_1-30_433_Cvi-1_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1 GSE5753 Expression Level Polymorphism Project (ELP) - Cvi-1
21.0 99.6 GSM134404 St.Clair_1-101_324_Tsu-1_0.30mM-SA-in-0.02%-silwet_Rep2_ATH1 GSE5755 Expression Level Polymorphism Project (ELP) - Tsu-1
20.6 99.6 GSM134387 St.Clair_1-48_397_Est_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1 GSE5754 Expression Level Polymorphism Project (ELP) - Est
20.2 99.6 GSM134457 St.Clair_1-82_294_Mt-0_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1 GSE5758 Expression Level Polymorphism Project (ELP) - Mt-0
19.4 99.6 GSM134351 St.Clair_1-12_407_Col-0_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1 GSE5752 Expression Level Polymorphism Project (ELP) - Col-0
18.8 99.5 GSM134359 St.Clair_1-20_361_Cvi-1_0.02%-silwet_Rep2_ATH1 GSE5753 Expression Level Polymorphism Project (ELP) - Cvi-1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.15 2e-6 54 At4g29810 829103 ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2) encodes a MAP kinase kinase 2 that regulates MPK6 and MPK4 in response to cold and salt stresses. Co-expression with MEKK1 in protoplasts activated MKK2 activity, suggesting that MEKK1 may be a regulator of MKK2. C.G. S.X.
0.04 1e-4 48 At3g06230 819797 ATMKK8 member of MAP Kinase Kinase C.G. S.X.
0.03 1e-1 38 At3g18165 821343 MOS4 (Modifier of snc1,4) Encodes MOS4 (Modifier of snc1, 4), a nuclear protein homologous to human Breast Cancer-Amplified Sequence (BCAS2). MOS4 interacts with AtCDC5 and PRL1. All three proteins are essential for plant innate immunity. C.G. S.X.
0.02 5e-1 36 At2g17620 816269 CYCB2 F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus;MPOFV C.G. S.X.
0.02 5e-1 36 At1g77790 844116 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;POF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 2e-4 48 Glycine max GmaAffx.86005.1.S1_at BF594931 - - 3e-4 At4g29810 ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2) C.G. S.X.
0.02 4e+0 32 Hordeum vulgare Contig12592_at Contig12592 - - 6e+0 At4g26070 MEK1 (MAP KINASE/ ERK KINASE 1) C.G. S.X.
0.02 9e-1 36 Oryza sativa Os02g0832200 AK108268.1 - Conserved hypothetical protein 3e-2 At1g20816 unknown protein C.G. S.X.
0.16 1e-8 61 Populus trichocarpa PtpAffx.22761.1.A1_at BP932638 hypothetical protein - 3e-5 At4g29810 ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2) C.G. S.X.
0.02 2e+0 34 Triticum aestivum TaAffx.120000.1.S1_at BJ248340 tousled-like protein kinase - 7e-25 At5g20930 TSL (TOUSLED) C.G. S.X.
0.28 2e-13 75 Vitis vinifera 1608127_s_at AY395740.1 similar to putative mitogen-activated protein kinase kinase - 6e-13 At4g26070 MEK1 (MAP KINASE/ ERK KINASE 1) C.G. S.X.
0.03 5e-2 38 Zea mays Zm.6861.1.A1_at U83625.1 MEK homolog1 - 1e-24 At5g56580 MKK6 (MAP KINASE KINASE 6) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009814 A response of a plant to a pathogenic agent that prevents the occurrence or spread of disease.
X GO:0009414 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water.
X GO:0002237 A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by molecules of bacterial origin such as peptides derived from bacterial flagellin.
X GO:0042542 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus.
X GO:0042742 Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
X GO:0009611 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism.
S GO:0000165 Cascade of at least three protein kinase activities culminating in the phosphorylation and activation of a MAP kinase. MAPKKK cascades lie downstream of numerous signaling pathways.
S GO:0009628 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abiotic (non-living) stimulus.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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