CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g26020

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.79 89.1 At4g26020 828708 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV S.X. H.G.
0.91 95.6 At5g14560 831307 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.86 93.1 At2g13900 815874 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMO S.X. H.G.
0.85 92.4 At4g16050 827290 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVA S.X. H.G.
0.80 89.8 At4g02970 828121 AT7SL-1 (Arabidopsis 7SL RNA 1) Signal recognition particle. Type 4 of RNA polymerase III dependent genes. S.X. H.G.
0.79 89.1 At5g66370 836769 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POF S.X. H.G.
0.77 88.0 At2g40440 818638 BTB/POZ domain-containing protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;PMO S.X. H.G.
0.77 88.0 At4g25510 828655 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.76 87.4 At5g18160 831934 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.75 86.9 At1g52430 841674 ubiquitin carboxyl-terminal hydrolase-related F:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;POBMF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
367.1 100.0 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
351.9 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
318.9 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
316.6 100.0 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
294.3 100.0 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
293.2 100.0 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
286.2 100.0 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
268.5 100.0 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
266.7 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
263.1 100.0 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 9e-2 38 At5g49560 835018 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOB C.G. S.X.
0.02 9e-2 38 At4g26660 828773 - F:unknown;P:biological_process unknown;C:chloroplast;MOFBPAV C.G. S.X.
0.02 9e-2 38 At1g03490 839487 ANAC006 (Arabidopsis NAC domain containing protein 6) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:unknown;PMOVBF C.G. S.X.
0.02 4e-1 36 At1g51420 841567 SPP1 (SUCROSE-PHOSPHATASE 1) F:phosphatase activity, magnesium ion binding, sucrose-phosphatase activity, catalytic activity;P:sucrose biosynthetic process, metabolic process;C:plasma membrane;BPO C.G. S.X.
0.01 4e-1 36 At1g79150 844256 binding F:binding;P:biological_process unknown;C:cellular_component unknown;OMFBPVA C.G. S.X.
0.01 1e+0 34 At5g01720 831688 F-box family protein (FBL3) F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:endomembrane system;MPOFBV C.G. S.X.
0.02 1e+0 34 At4g32390 829374 phosphate translocator-related F:organic anion transmembrane transporter activity;P:unknown;C:endomembrane system;PMFOB C.G. S.X.
0.02 1e+0 34 At2g28940 817443 protein kinase family protein F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e-1 38 Glycine max GmaAffx.29031.1.A1_at BU550485 - - 6e-2 At4g26020 - C.G. S.X.
0.03 3e+0 32 Hordeum vulgare HV09F13u_at HV09F13u - - 4e+0 At3g63050 unknown protein C.G. S.X.
0.03 2e-1 38 Oryza sativa Os04g0102500 CR292872 - Phosphoglycerate mutase-like protein 3e-6 At5g64460 - C.G. S.X.
0.14 9e-6 52 Populus trichocarpa PtpAffx.214610.1.S1_at pmrna28391 hypothetical protein - 8e-6 At4g26020 - C.G. S.X.
0.03 2e+0 34 Triticum aestivum Ta.14884.1.S1_at CA683821 - - 1e+0 At4g26020 - C.G. S.X.
0.03 3e-2 38 Vitis vinifera 1614448_at CB976275 hypothetical protein LOC100247399 - 4e-1 At2g25140 CLPB4 (CASEIN LYTIC PROTEINASE B4) C.G. S.X.
0.03 1e-2 40 Zea mays Zm.9976.1.A1_at CA399976 - - 2e+0 At4g02170 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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