Gene omics information

Query gene ID At4g25490
Gene name CBF1 (C-REPEAT/DRE BINDING FACTOR 1)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At4g25490828653CBF1 (C-REPEAT/DRE BINDING FACTOR 1)Transcriptional activator that binds to the DRE/CRT regulatory element and induces COR (cold-regulated) gene expression increasing plant freezing tolerance. It encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF1). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature and abscisic acid.S.X.H.G.
0.8693.1At4g25470828651CBF2 (C-REPEAT/DRE BINDING FACTOR 2)Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF2). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature, abscisic acid, and circadian rhythm. Overexpressing this gene leads to increased freeze tolerance and induces the expression level of 85 cold-induced genes and reduces the expression level of 8 cold-repressed genes, which constitute the CBF2 regulon. Mutations in CBF2 increases the expression level of CBF1 and CBF3, suggesting that this gene may be involved in a negative regulatory or feedback circuit of the CBF pathway.S.X.H.G.
0.6781.6At4g25480828652DREB1A (DEHYDRATION RESPONSE ELEMENT B1A)encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF3). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature and abscisic acid.S.X.H.G.
0.6781.6At5g51990835274CBF4 (C- REPEAT-BINDING FACTOR 4)encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF4). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to drought stress and abscisic acid treatment, but not to low temperature.S.X.H.G.
0.010.2At4g27652828877unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
420.9100.0E-MEXP-67-raw-cel-323396336
350.0100.0E-MEXP-67-raw-cel-323396457
324.3100.0GSM131268AtGen_6-1312_Cold(4°C)-Shoots-3.0h_Rep2GSE5621AtGenExpress: Stress Treatments (Cold stress)
234.5100.0GSM131273AtGen_6-1421_Cold(4°C)-Roots-6.0h_Rep1GSE5621AtGenExpress: Stress Treatments (Cold stress)
230.0100.0GSM131267AtGen_6-1311_Cold(4°C)-Shoots-3.0h_Rep1GSE5621AtGenExpress: Stress Treatments (Cold stress)
192.8100.0GSM131274AtGen_6-1422_Cold(4°C)-Roots-6.0h_Rep2GSE5621AtGenExpress: Stress Treatments (Cold stress)
172.3100.0GSM131270AtGen_6-1322_Cold(4°C)-Roots-3.0h_Rep2GSE5621AtGenExpress: Stress Treatments (Cold stress)
162.799.9GSM74897Wildtype_3H Cold_Rep2GSE3326ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
142.599.9GSM131271AtGen_6-1411_Cold(4°C)-Shoots-6.0h_Rep1GSE5621AtGenExpress: Stress Treatments (Cold stress)
136.399.9GSM74896Wildtype_3H Cold_Rep1GSE3326ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.856e-163573At4g25470828651CBF2 (C-REPEAT/DRE BINDING FACTOR 2)Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF2). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature, abscisic acid, and circadian rhythm. Overexpressing this gene leads to increased freeze tolerance and induces the expression level of 85 cold-induced genes and reduces the expression level of 8 cold-repressed genes, which constitute the CBF2 regulon. Mutations in CBF2 increases the expression level of CBF1 and CBF3, suggesting that this gene may be involved in a negative regulatory or feedback circuit of the CBF pathway.C.G.S.X.
0.771e-142506At4g25480828652DREB1A (DEHYDRATION RESPONSE ELEMENT B1A)encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF3). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature and abscisic acid.C.G.S.X.
0.383e-32139At5g51990835274CBF4 (C- REPEAT-BINDING FACTOR 4)encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF4). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to drought stress and abscisic acid treatment, but not to low temperature.C.G.S.X.
0.086e-961At3g16280820874DNA binding / transcription factorencodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.C.G.S.X.
0.071e-654At2g44940819103AP2 domain-containing transcription factor TINY, putativeencodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.C.G.S.X.
0.125e-652At2g35700818139ERF38 (ERF FAMILY PROTEIN 38)encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Thought to be involved in secondary cell wall metabolism.C.G.S.X.
0.158e-548At1g12610837817DDF1 (DWARF AND DELAYED FLOWERING 1)Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (DDF1). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. Overexpression of this gene results in delayed flowering and dwarfism, reduction of gibberellic acid biosynthesis, and increased tolerance to high levels of salt. This gene is expressed in all tissues examined, but most abundantly expressed in upper stems. Overexpression of this gene is also correlated with increased expression of GA biosynthetic genes and RD29A (a cold and drought responsive gene). Under salt stress it induces the expression of GAOX7, which encodes ad C20-GA inhibitor.C.G.S.X.
0.065e-342At2g25820817124transcription factorencodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.C.G.S.X.
0.022e-240At5g53290835410CRF3 (CYTOKININ RESPONSE FACTOR 3)encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.093e-859Glycine maxGmaAffx.2501.2.S1_atAW308782CBF-like protein-6e-5At4g25480DREB1A (DEHYDRATION RESPONSE ELEMENT B1A)C.G.S.X.
0.032e+032Hordeum vulgareHV_CEb0007B08r2_x_atHV_CEb0007B08r2--3e+0At4g00585unknown proteinC.G.S.X.
0.092e-138Oryza sativaOs02g0677300AK106041.1-CRT/DRE binding factor 14e-2At1g15360SHN1 (SHINE 1)C.G.S.X.
0.081e-138Populus trichocarpaPtpAffx.147430.1.A1_atCV237810AP2/ERF domain-containing transcription factor-7e-2At4g25490CBF1 (C-REPEAT/DRE BINDING FACTOR 1)C.G.S.X.
0.068e-238Triticum aestivumTa.25843.1.A1_atCD453611CBFIVc-B14-1e-1At4g25490CBF1 (C-REPEAT/DRE BINDING FACTOR 1)C.G.S.X.
0.032e+032Vitis vinifera1622205_atBQ798776--3e-7At4g00430PIP1C.G.S.X.
0.045e-134Zea maysZm.9418.1.S1_atAF493799.1DREB-like protein-4e-2At2g35700ERF38 (ERF FAMILY PROTEIN 38)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009631Any process that increases freezing tolerance of an organism in response to low, nonfreezing temperatures.
XGO:0009409A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
XGO:0009414A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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