CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g25480

Gene name DREB1A (DEHYDRATION RESPONSE ELEMENT B1A)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.31 33.8 At4g25480 828652 DREB1A (DEHYDRATION RESPONSE ELEMENT B1A) encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF3). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature and abscisic acid. S.X. H.G.
0.40 50.8 At4g25490 828653 CBF1 (C-REPEAT/DRE BINDING FACTOR 1) Transcriptional activator that binds to the DRE/CRT regulatory element and induces COR (cold-regulated) gene expression increasing plant freezing tolerance. It encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF1). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature and abscisic acid. S.X. H.G.
0.25 22.6 At5g51990 835274 CBF4 (C- REPEAT-BINDING FACTOR 4) encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF4). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to drought stress and abscisic acid treatment, but not to low temperature. S.X. H.G.
0.08 2.3 At1g68500 843179 unknown protein F:unknown;P:unknown;C:cellular_component unknown;P S.X. H.G.
0.08 2.3 At1g51090 841532 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PBOMVF S.X. H.G.
0.07 1.9 At1g56600 842114 AtGolS2 (Arabidopsis thaliana galactinol synthase 2) F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBO S.X. H.G.
0.05 1.1 At5g25110 832582 CIPK25 (CBL-INTERACTING PROTEIN KINASE 25) member of AtCIPKs S.X. H.G.
0.04 0.9 At1g60190 842314 armadillo/beta-catenin repeat family protein / U-box domain-containing protein F:ubiquitin-protein ligase activity, protein binding, binding, zinc ion binding;P:protein ubiquitination;C:ubiquitin ligase complex;PMOFBVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
387.6 100.0 GSM131273 AtGen_6-1421_Cold(4°C)-Roots-6.0h_Rep1 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
374.2 100.0 GSM131274 AtGen_6-1422_Cold(4°C)-Roots-6.0h_Rep2 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
231.4 100.0 GSM131267 AtGen_6-1311_Cold(4°C)-Shoots-3.0h_Rep1 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
219.5 100.0 GSM131272 AtGen_6-1412_Cold(4°C)-Shoots-6.0h_Rep2 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
215.2 100.0 GSM131271 AtGen_6-1411_Cold(4°C)-Shoots-6.0h_Rep1 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
161.0 99.9 GSM131268 AtGen_6-1312_Cold(4°C)-Shoots-3.0h_Rep2 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
139.3 99.9 Evans_2-12_fab3-7-8-mut-aeq-cold_ATH1
132.4 99.9 GSM131269 AtGen_6-1321_Cold(4°C)-Roots-3.0h_Rep1 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
123.4 99.9 E-MEXP-67-raw-cel-323396336
118.9 99.9 Evans_2-8_35s-FAD3-cold_ATH1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.79 2e-172 605 At4g25470 828651 CBF2 (C-REPEAT/DRE BINDING FACTOR 2) Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF2). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature, abscisic acid, and circadian rhythm. Overexpressing this gene leads to increased freeze tolerance and induces the expression level of 85 cold-induced genes and reduces the expression level of 8 cold-repressed genes, which constitute the CBF2 regulon. Mutations in CBF2 increases the expression level of CBF1 and CBF3, suggesting that this gene may be involved in a negative regulatory or feedback circuit of the CBF pathway. C.G. S.X.
0.77 1e-142 506 At4g25490 828653 CBF1 (C-REPEAT/DRE BINDING FACTOR 1) Transcriptional activator that binds to the DRE/CRT regulatory element and induces COR (cold-regulated) gene expression increasing plant freezing tolerance. It encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF1). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature and abscisic acid. C.G. S.X.
0.40 8e-33 141 At5g51990 835274 CBF4 (C- REPEAT-BINDING FACTOR 4) encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF4). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to drought stress and abscisic acid treatment, but not to low temperature. C.G. S.X.
0.09 9e-11 67 At2g44940 819103 AP2 domain-containing transcription factor TINY, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. C.G. S.X.
0.04 3e-4 46 At1g12630 837819 DNA binding / transcription activator/ transcription factor encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. C.G. S.X.
0.07 5e-3 42 At3g16280 820874 DNA binding / transcription factor encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. C.G. S.X.
0.04 5e-3 42 At1g33760 840267 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. C.G. S.X.
0.06 8e-2 38 At2g35700 818139 ERF38 (ERF FAMILY PROTEIN 38) encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Thought to be involved in secondary cell wall metabolism. C.G. S.X.
0.01 3e-1 36 At5g26860 832744 LON1 (LON PROTEASE 1) Encodes a member of the Lon protease-like proteins (Lon1/At5g26860, Lon2/At5g47040, Lon3/At3g05780, Lon4/At3g05790). Lon is a multifunctional ATP-dependent protease which exists in bacteria, archaea and within organelles in eukaryotic cells. Lon proteases are responsible for the degradation of abnormal, damaged and unstable proteins. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 1e-4 48 Glycine max GmaAffx.2501.2.S1_at AW308782 CBF-like protein - 6e-5 At4g25480 DREB1A (DEHYDRATION RESPONSE ELEMENT B1A) C.G. S.X.
0.03 2e+0 32 Hordeum vulgare Contig16141_at Contig16141 - - 1e+0 At5g08480 VQ motif-containing protein C.G. S.X.
0.03 6e-1 36 Oryza sativa OsAffx.9245.1.S1_at - - - 0 C.G. S.X.
0.13 4e-1 36 Populus trichocarpa PtpAffx.219982.1.S1_s_at pmrna36193 AP2/ERF domain-containing transcription factor /// AP2/ERF domain-containing transcription factor - 4e-11 At2g35700 ERF38 (ERF FAMILY PROTEIN 38) C.G. S.X.
0.03 1e+0 34 Triticum aestivum TaAffx.7890.1.S1_at CA645329 - - 2e-1 At5g03660 unknown protein C.G. S.X.
0.04 4e-1 34 Vitis vinifera 1608315_at CA814287 hypothetical protein LOC100245542 - 3e-17 At4g36900 RAP2.10 (related to AP2 10) C.G. S.X.
0.04 2e+0 32 Zea mays Zm.6246.2.A1_at AI677558 - - 9e-7 At2g22080 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009631 Any process that increases freezing tolerance of an organism in response to low, nonfreezing temperatures.
X GO:0009409 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
X GO:0009414 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water.
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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