CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g25260

Gene name invertase/pectin methylesterase inhibitor family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.28 30.3 At4g25260 828629 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:shade avoidance;C:endomembrane system;P S.X. H.G.
0.67 81.6 At2g19660 816485 DC1 domain-containing protein F:molecular_function unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO S.X. H.G.
0.32 35.7 At1g06980 837208 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.31 33.8 At1g27670 839659 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.29 30.3 At4g16515 827350 unknown protein F:molecular_function unknown;P:unknown;C:endomembrane system;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
103.2 99.9 E-MEXP-1443-raw-cel-1581869745
84.7 99.9 E-MEXP-1443-raw-cel-1581869803
55.1 99.8 GSM226272 phyAphyB_Dark_replicate3 GSE8951 A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks
48.5 99.8 GSM226269 WT(Ler)_Dark_replicate3 GSE8951 A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks
47.7 99.8 GSM292081 pif1-2, dark sample, biological rep3 GSE11594 Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings
44.3 99.8 GSM226267 WT(Ler)_Dark_replicate1 GSE8951 A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks
43.1 99.8 GSM226271 phyAphyB_Dark_replicate2 GSE8951 A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks
42.9 99.8 GSM134515 Col-0_4day_dark_+lincomycin_rep1 GSE5759 red illumination w/o lincomycin
42.9 99.8 GSM226270 phyAphyB_Dark_replicate1 GSE8951 A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks
42.3 99.8 GSM292077 Wt, dark sample, biological rep2 GSE11594 Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.04 7e-2 38 At5g42380 834244 CML37 (CALMODULIN LIKE 37) F:calcium ion binding;P:response to ozone;C:chloroplast;MPOFBV C.G. S.X.
0.01 3e-1 36 At5g49160 834975 MET1 (METHYLTRANSFERASE 1) Encodes a cytosine methyltransferase MET1. Required for silencing of FWA paternal allele in endosperm. Two lines with RNAi constructs directed against DMT1 have reduced agrobacterium-mediated tumor formation. C.G. S.X.
0.01 3e-1 36 At3g51120 824276 DNA binding / nucleic acid binding / protein binding / zinc ion binding F:protein binding, DNA binding, zinc ion binding, nucleic acid binding;P:histone modification, transcription initiation;C:nucleus;MOPBFV C.G. S.X.
0.02 1e+0 34 At5g45170 834553 CbbY protein-related F:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;BPO C.G. S.X.
0.01 1e+0 34 At2g28260 817372 ATCNGC15 member of Cyclic nucleotide gated channel family C.G. S.X.
0.01 1e+0 34 At1g49340 841357 ATPI4K ALPHA Encodes a phosphatidylinositol 4-kinase that is expressed in inflorescences and shoots. C.G. S.X.
0.02 1e+0 34 At1g79380 844276 copine-related F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPVF C.G. S.X.
0.01 1e+0 34 At1g04840 839402 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e-1 36 Glycine max GmaAffx.16264.1.A1_at BU544357 - - 1e+0 At5g56550 OXS3 (OXIDATIVE STRESS 3) C.G. S.X.
0.04 9e+0 30 Hordeum vulgare HVSMEi0002F22r2_s_at HVSMEi0002F22r2 - - 3e+0 At3g18120 F-box family protein-related C.G. S.X.
0.04 2e+0 34 Oryza sativa Os01g0309660 9629.m01981 - - 8e-1 At4g25260 invertase/pectin methylesterase inhibitor family protein C.G. S.X.
0.03 4e-4 46 Populus trichocarpa Ptp.5816.1.S1_at DN487334 hypothetical protein - 1e-1 At5g62350 invertase/pectin methylesterase inhibitor family protein / DC 1.2 homolog (FL5-2I22) C.G. S.X.
0.03 8e-2 38 Triticum aestivum TaAffx.29481.1.S1_at CA641963 - - 7e-2 At4g25260 invertase/pectin methylesterase inhibitor family protein C.G. S.X.
0.04 2e-5 48 Vitis vinifera 1606429_at CF373019 hypothetical protein LOC100251832 - 2e-1 At4g12390 PME1 (PECTIN METHYLESTERASE INHIBITOR 1) C.G. S.X.
0.05 2e+0 32 Zea mays Zm.9917.1.A1_at BM331863 ribosomal protein L32 containing protein - 1e+0 At1g69485 structural constituent of ribosome C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009641 Shade avoidance is a set of responses that plants display when they are subjected to the shade of another plant. It often includes elongation, altered flowering time, increased apical dominance and altered partitioning of resources. Plants are able to distinguish between the shade of an inanimate object (e.g. a rock) and the shade of another plant due to the altered balance between red and far-red light in the shade of a plant; this balance between red and far-red light is perceived by phytochrome.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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