CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g25250

Gene name invertase/pectin methylesterase inhibitor family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.43 55.3 At4g25250 828628 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:unknown;PMO S.X. H.G.
0.57 73.8 At4g01630 827983 ATEXPA17 (ARABIDOPSIS THALIANA EXPANSIN A17) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) S.X. H.G.
0.50 65.3 At2g39040 818490 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO S.X. H.G.
0.44 57.2 At4g31470 829274 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB S.X. H.G.
0.29 30.3 At4g31320 829259 auxin-responsive protein, putative / small auxin up RNA (SAUR_C) F:calmodulin binding;P:response to auxin stimulus;C:cellular_component unknown;PO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
302.4 100.0 GSM226536 L6SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
278.8 100.0 GSM184891 Arabidopsis, root cells, epidermis and lateral root cap, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
214.3 100.0 GSM184889 Arabidopsis, root cells, epidermis and lateral root cap, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
192.9 100.0 GSM184890 Arabidopsis, root cells, epidermis and lateral root cap, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
114.4 99.9 GSM218292 At_Standard_cpctry-2 GSE8787 Expression analysis of the salt stress response in Arabidopsis mutants with defects in hair patterning
98.3 99.9 GSM266662 Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 1 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
97.6 99.9 GSM266671 Arabidopsis, root cells, cortex, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
90.8 99.9 GSM218288 At_Standard_wermyb23-2 GSE8787 Expression analysis of the salt stress response in Arabidopsis mutants with defects in hair patterning
88.4 99.9 GSM266665 Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 4 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
82.8 99.9 GSM218291 At_Standard_cpctry-1 GSE8787 Expression analysis of the salt stress response in Arabidopsis mutants with defects in hair patterning
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.43 6e-18 91 At5g51520 835226 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:unknown;P C.G. S.X.
0.07 2e-5 50 At1g14890 838054 enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:unknown;P C.G. S.X.
0.03 3e-4 46 At2g23093 816840 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMBOF C.G. S.X.
0.03 7e-2 38 At5g64680 836589 unknown protein F:molecular_function unknown;P:biological_process unknown;C:nucleolus;MOPF C.G. S.X.
0.08 7e-2 38 At2g01610 814690 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.01 7e-2 38 At1g79930 844333 HSP91 encodes high molecular weight heat shock protein 70 not a HSP90 homolog, mRNA is constitutively expressed but transiently induced after heat shock C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 3e-5 50 Glycine max Gma.6339.1.S1_s_at BI320985 - - 3e-5 At4g25250 invertase/pectin methylesterase inhibitor family protein C.G. S.X.
0.03 1e-1 36 Hordeum vulgare HA20I04r_at HA20I04r - - 1e+0 At5g24313 unknown protein C.G. S.X.
0.05 2e+0 34 Oryza sativa OsAffx.20662.1.A1_at - - - 0 C.G. S.X.
0.07 4e-4 46 Populus trichocarpa PtpAffx.58139.1.S1_at CV269192 hypothetical protein - 6e-22 At2g01610 invertase/pectin methylesterase inhibitor family protein C.G. S.X.
0.03 1e+0 34 Triticum aestivum TaAffx.22790.1.S1_at CA744941 - - 9e-1 At2g20613 unknown protein C.G. S.X.
0.03 1e+0 32 Vitis vinifera 1618045_at CF216119 hypothetical protein LOC100243133 - 7e-2 At1g69760 unknown protein C.G. S.X.
0.02 2e+0 32 Zea mays Zm.7709.1.A1_at BM269078 hypothetical protein LOC100280092 - 5e-1 At1g71695 peroxidase 12 (PER12) (P12) (PRXR6) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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