CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g25160

Gene name protein kinase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.20 14.4 At4g25160 828619 protein kinase family protein F:ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, protein ubiquitination, response to stress;C:ubiquitin ligase complex;MPOBFVA S.X. H.G.
0.29 30.3 At1g30990 839985 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P S.X. H.G.
0.17 10.2 At1g16440 838214 kinase F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MOPFBVA S.X. H.G.
0.15 7.8 At3g44510 823576 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB S.X. H.G.
0.07 1.9 At5g49270 834987 SHV2 (SHAVEN 2) Involved in successfully establishing tip growth in root hairs. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
466.7 100.0 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
405.3 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
232.8 100.0 GSM133957 Fukuda_1-2_0B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
224.2 100.0 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
212.2 100.0 GSM184497 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
177.8 100.0 GSM133774 Lindsey_1-26_torpedo-meristem_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
93.3 99.9 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
86.0 99.9 GSM226538 L8SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
79.2 99.9 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
72.3 99.9 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.34 6e-95 349 At5g51270 835201 protein kinase family protein F:ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, protein ubiquitination;C:ubiquitin ligase complex;MPOBFVA C.G. S.X.
0.09 2e-24 115 At5g61550 836276 protein kinase family protein F:ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, protein ubiquitination;C:ubiquitin ligase complex;MPOBFVA C.G. S.X.
0.02 9e-11 69 At4g31230 829250 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.02 5e-3 44 At5g57035 835807 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ ubiquitin-protein ligase F:ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, protein ubiquitination;C:ubiquitin ligase complex;MPOBFVA C.G. S.X.
0.03 2e-2 42 At5g61560 836277 protein kinase family protein F:in 6 functions;P:protein amino acid phosphorylation, protein ubiquitination;C:chloroplast, plasma membrane;MPOBFVA C.G. S.X.
0.01 2e-2 42 At2g24230 816957 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 2e-2 42 At1g06840 837196 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane, membrane;MPOBFVA C.G. S.X.
0.01 8e-2 40 At5g18700 831988 EMB3013 (embryo defective 3013) F:protein serine/threonine kinase activity, binding, protein kinase activity, kinase activity, ATP binding;P:embryonic development ending in seed dormancy;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.01 3e-1 38 At5g50180 835083 protein kinase, putative F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOFBVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 2e-3 46 Glycine max GmaAffx.74239.1.S1_at BQ740358 - - 2e-4 At4g25160 protein kinase family protein C.G. S.X.
0.01 2e+0 34 Hordeum vulgare Contig9882_s_at Contig9882 - - 2e-18 At4g17050 UGLYAH (UREIDOGLYCINE AMINOHYDROLASE) C.G. S.X.
0.02 4e-2 42 Oryza sativa Os10g0561500 AK099675.1 - Protein kinase domain containing protein 2e-2 At4g25160 protein kinase family protein C.G. S.X.
0.06 2e-15 85 Populus trichocarpa PtpAffx.223311.1.S1_at pmrna41239 hypothetical protein - 7e-16 At4g25160 protein kinase family protein C.G. S.X.
0.02 3e-1 38 Triticum aestivum TaAffx.65130.1.S1_at BJ259878 - - 7e-2 At5g02470 DPA C.G. S.X.
0.03 6e-6 52 Vitis vinifera 1616855_at CD003909 - - 9e-15 At5g24010 protein kinase family protein C.G. S.X.
0.01 2e+0 34 Zea mays Zm.6567.1.A1_at BM072999 - - 2e+0 At5g41030 TCP family transcription factor, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
L GO:0006950 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
L GO:0016567 The process by which one or more ubiquitin moieties are added to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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