CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g25090

Gene name respiratory burst oxidase, putative / NADPH oxidase, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g25090 828612 respiratory burst oxidase, putative / NADPH oxidase, putative F:in 7 functions;P:oxidation reduction;C:cytosolic ribosome, vacuole;MFPBOA S.X. H.G.
0.73 85.5 At2g21045 816639 - F:unknown;P:aging;C:unknown;BOPAFM S.X. H.G.
0.72 84.8 At1g13300 837890 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POVBMF S.X. H.G.
0.72 84.8 At1g78000 844135 SULTR1 Encodes a sulfate transporter that can restore sulfate uptake capacity of a yeast mutant lacking sulfate transporter genes. S.X. H.G.
0.72 84.8 At2g42350 818836 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV S.X. H.G.
0.68 82.2 At5g05400 830422 disease resistance protein (CC-NBS-LRR class), putative F:protein binding, ATP binding;P:N-terminal protein myristoylation, defense response, apoptosis;C:chloroplast;PMBOFA S.X. H.G.
0.68 82.2 At5g40510 834049 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FBPOA S.X. H.G.
0.64 78.9 At3g13760 820585 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:membrane;PMO S.X. H.G.
0.64 78.9 At3g24290 822017 AMT1 F:ammonium transmembrane transporter activity;P:ammonium transport, transport;C:endomembrane system, membrane;OBMFPA S.X. H.G.
0.63 78.1 At1g31885 840079 transporter F:transporter activity;P:transport;C:integral to membrane, membrane;BPOMFAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
52.9 99.8 GSM142754 MJ001_ATH1_A5-jones-WT-Rep3 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
46.0 99.8 GSM184539 Whole roots 2hr KCl control treated then frozen, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
44.6 99.8 E-MEXP-828-raw-cel-1156922368
44.4 99.8 GSM179958 Arabidopsis roots, air treatment, replica 1 GSE7432 Ethylene and auxin interactions in the roots of Arabidopsis seedlings
44.1 99.8 GSM218596 Whole roots 3.5hr KNO3 treated then frozen, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
43.8 99.8 GSM265431 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
43.4 99.8 E-MEXP-828-raw-cel-1156922296
42.4 99.8 E-MEXP-635-raw-cel-912819840
41.8 99.8 GSM184533 Protoplasted root cells 2hr KCl control treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
40.5 99.8 GSM157329 Coates_1-1_Col-0_Rep1_ATH1 GSE6826 Identification of candidate Arabidillo target genes in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.49 5e-40 167 At5g51060 835179 RHD2 (ROOT HAIR DEFECTIVE 2) RHD2 (along with RHD3 and RHD4) is required for normal root hair elongation. Has NADPH oxidase activity. Gene is expressed in the elongation and differention zone in trichoblasts and elongating root hairs. RDH2 is localized to the growing tips of root hair cells. It is required for the production of reactive oxygen species in response to extracellular ATP stimulus. The increase in ROS production stimulates Ca2+ influx. C.G. S.X.
0.19 6e-12 73 At5g07390 830630 ATRBOHA (respiratory burst oxidase homolog A) F:calcium ion binding;P:defense response;C:intrinsic to plasma membrane;MFPOBA C.G. S.X.
0.08 1e-9 65 At5g47910 834842 RBOHD (RESPIRATORY BURST OXIDASE HOMOLOGUE D) NADPH/respiratory burst oxidase protein D (RbohD).Interacts with AtrbohF gene to fine tune the spatial control of ROI production and hypersensitive response to cell in and around infection site. C.G. S.X.
0.07 5e-6 54 At1g64060 842710 ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F) Interacts with AtrbohD gene to fine tune the spatial control of ROI production and hypersensitive response to cell in and around infection site. C.G. S.X.
0.04 9e-5 50 At3g45810 823724 ferric reductase-like transmembrane component family protein F:in 8 functions;P:oxidation reduction;C:membrane;MPFOBA C.G. S.X.
0.02 1e-3 46 At1g19230 838506 respiratory burst oxidase protein E (RbohE) / NADPH oxidase F:in 7 functions;P:defense response;C:integral to membrane, membrane;MFPBOA C.G. S.X.
0.07 5e-3 44 At4g11230 826725 respiratory burst oxidase, putative / NADPH oxidase, putative F:in 6 functions;P:oxidation reduction;C:integral to membrane, membrane;MFPBOA C.G. S.X.
0.03 5e-3 44 At1g09090 837430 ATRBOHB (respiratory burst oxidase homolog B) F:in 7 functions;P:response to heat, defense response;C:integral to membrane, membrane;MPFOBA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 2e-15 85 Glycine max GmaAffx.61345.1.S1_at CA938643 - - 2e-8 At5g51060 RHD2 (ROOT HAIR DEFECTIVE 2) C.G. S.X.
0.04 4e-5 50 Hordeum vulgare Contig8301_at Contig8301 - - 1e-4 At1g09090 ATRBOHB (respiratory burst oxidase homolog B) C.G. S.X.
0.07 2e-4 50 Oryza sativa Os05g0465800 AK072353.1 - Cytochrome b-245, heavy chain family protein 1e-16 At5g60010 FAD binding / calcium ion binding / electron carrier/ iron ion binding / oxidoreductase/ oxidoreductase, acting on NADH or NADPH, with oxygen as acceptor / peroxidase/ superoxide-generating NADPH oxidase C.G. S.X.
0.14 1e-4 50 Populus trichocarpa PtpAffx.216000.1.S1_at pmrna30509 hypothetical protein - 9e-8 At5g07390 ATRBOHA (respiratory burst oxidase homolog A) C.G. S.X.
0.04 9e-5 50 Triticum aestivum Ta.5620.1.S1_x_at CD888222 - - 2e-6 At1g09090 ATRBOHB (respiratory burst oxidase homolog B) C.G. S.X.
0.01 6e+0 32 Vitis vinifera 1621839_at CD715518 - - 5e+0 At4g14550 IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14) C.G. S.X.
0.06 9e-3 42 Zea mays Zm.13659.1.A1_at AY107147.1 - - 1e-2 At5g47910 RBOHD (RESPIRATORY BURST OXIDASE HOMOLOGUE D) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0055114 The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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