CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g25030

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.32 35.7 At4g25030 828606 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBF S.X. H.G.
0.67 81.6 At2g23320 816864 WRKY15 Encodes WRKY DNA-binding protein 15 (WRKY15). S.X. H.G.
0.50 65.3 At5g18490 831967 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMBO S.X. H.G.
0.33 38.1 At3g11820 820355 SYP121 (SYNTAXIN OF PLANTS 121) Encodes a syntaxin localized at the plasma membrane (SYR1, Syntaxin Related Protein 1, also known as SYP121, PENETRATION1/PEN1). SYR1/PEN1 is a member of the SNARE superfamily proteins. SNARE proteins are involved in cell signaling, vesicle traffic, growth and development. SYR1/PEN1 functions in positioning anchoring of the KAT1 K+ channel protein at the plasma membrane. Transcription is upregulated by abscisic acid, suggesting a role in ABA signaling. Also functions in non-host resistance against barley powdery mildew, Blumeria graminis sp. hordei. SYR1/PEN1 is a nonessential component of the preinvasive resistance against Colletotrichum fungus. Required for mlo resistance. S.X. H.G.
0.31 33.8 At1g08930 837414 ERD6 (EARLY RESPONSE TO DEHYDRATION 6) encodes a putative sucrose transporter whose gene expression is induced by dehydration and cold. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
31.7 99.7 E-MEXP-1094-raw-cel-1379507313
30.7 99.7 GSM13780 Cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
30.0 99.7 GSM39211 RRE2_Chitin1 GSE2169 rre1 and rre2 mutants
28.8 99.7 GSM39196 RRE1_Chitin2 GSE2169 rre1 and rre2 mutants
27.5 99.7 E-MEXP-1094-raw-cel-1379507273
27.4 99.7 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
26.4 99.7 GSM13779 Dexamethasone plus cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
25.0 99.6 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
22.4 99.6 GSM131132 AtGen_B-18_2-4-1_REP2_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
21.5 99.6 GSM39214 RRE2_Chitin4 GSE2169 rre1 and rre2 mutants
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.07 9e-6 52 At5g45410 834577 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB C.G. S.X.
0.03 5e-1 36 At4g30860 829210 SDG4 (SET DOMAIN GROUP 4) Encodes a member of the trxG protein family. Contains a SET domain which is known to be involved in modification of histone tails by methylation. Interacts physically with AMS, but the implications of this interaction are unknown.Overexpression results in plieotrophic developmental defects. C.G. S.X.
0.02 5e-1 36 At4g28230 828938 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBV C.G. S.X.
0.01 5e-1 36 At3g24480 822038 leucine-rich repeat family protein / extensin family protein F:structural constituent of cell wall, protein binding;P:unknown;C:cell wall, plant-type cell wall;PMOBFVA C.G. S.X.
0.02 5e-1 36 At3g17000 820956 UBC32 (ubiquitin-conjugating enzyme 32) F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFOPV C.G. S.X.
0.01 5e-1 36 At2g34360 817999 antiporter/ drug transporter/ transporter F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFAM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.23 8e-13 75 Glycine max Gma.7029.1.S1_at CD404616 - - 9e-13 At4g25030 unknown protein C.G. S.X.
0.03 6e-2 38 Hordeum vulgare Contig4280_at Contig4280 - - 1e-2 At5g45410 unknown protein C.G. S.X.
0.07 7e-8 59 Oryza sativa Os10g0580900 AK072734.1 - Conserved hypothetical protein 5e-8 At4g25030 unknown protein C.G. S.X.
0.23 5e-11 69 Populus trichocarpa Ptp.4369.1.S1_s_at BU809437 hypothetical protein - 4e-11 At4g25030 unknown protein C.G. S.X.
0.03 1e-1 38 Triticum aestivum Ta.4283.1.S1_a_at CD865796 - - 2e-1 At4g25030 unknown protein C.G. S.X.
0.16 4e-8 57 Vitis vinifera 1615923_at CA814782 hypothetical protein LOC100259846 - 8e-8 At4g25030 unknown protein C.G. S.X.
0.03 2e-1 36 Zea mays Zm.5048.9.S1_at AI600956 hypothetical protein LOC100191158 - 1e-5 At5g45410 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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