CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g24840

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.77 88.0 At4g24840 828587 - F:molecular_function unknown;P:protein transport, Golgi organization;C:vacuole;MFOP S.X. H.G.
0.77 88.0 At5g63840 836504 RSW3 (RADIAL SWELLING 3) radial swelling mutant shown to be specifically impaired in cellulose production. Encodes the alpha-subunit of a glucosidase II enzyme. S.X. H.G.
0.67 81.6 At4g34450 829596 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative F:protein binding, clathrin binding, structural molecule activity, binding;P:intracellular protein transport, vesicle-mediated transport;C:chloroplast, membrane;MFOPB S.X. H.G.
0.67 81.6 At5g61970 836318 signal recognition particle-related / SRP-related F:unknown;P:biological_process unknown;C:cellular_component unknown;MFOPBA S.X. H.G.
0.55 70.6 At3g26370 822241 unknown protein F:unknown;P:unknown;C:Golgi apparatus;P S.X. H.G.
0.55 70.6 At3g51050 824269 FG-GAP repeat-containing protein F:molecular_function unknown;P:cell-matrix adhesion;C:integrin complex, integral to membrane, plasma membrane;OPM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
21.4 99.6 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
11.6 99.3 GSM133979 Birnbaum_1-9_StageII-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
8.3 99.0 GSM184895 Arabidopsis, root cells, cortex, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
8.1 98.9 GSM265411 Arabidopsis, whole roots, -Fe, replicate 1 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
7.2 98.8 GSM133983 Birnbaum_1-13_StageIII-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
7.0 98.7 GSM184909 Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
6.9 98.7 GSM184924 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
6.9 98.7 GSM184893 Arabidopsis, root cells, columella root cap, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
6.7 98.7 E-MEXP-98-raw-cel-320189079
6.6 98.7 GSM142594 DB001_ATH1_A4-Brown-cal GSE6148 The trans-differentiation of cultured Arabidopsis cells
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 7e-2 40 At3g23470 821928 cyclopropane-fatty-acyl-phospholipid synthase F:cyclopropane-fatty-acyl-phospholipid synthase activity;P:lipid biosynthetic process;C:endomembrane system;OBFPAM C.G. S.X.
0.01 3e-1 38 At4g37210 829875 tetratricopeptide repeat (TPR)-containing protein F:binding;P:biological_process unknown;C:cellular_component unknown;MFOPBVA C.G. S.X.
0.01 1e+0 36 At4g14103 827048 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB C.G. S.X.
0.01 1e+0 36 At2g27990 817343 BLH8 (BEL1-LIKE HOMEODOMAIN 8) Encodes a BEL1-like homeobox gene that functions together with PNY in meristem maintenance by regulating the allocation process during vegetative and reproductive development. Both gene products are required for the competence of the SAM to respond properly to floral inductive signals. C.G. S.X.
0.01 5e+0 34 At5g03000 831712 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MPBOVAF C.G. S.X.
0.01 5e+0 34 At5g66460 836778 (1-4)-beta-mannan endohydrolase, putative F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBOA C.G. S.X.
0.01 5e+0 34 At5g44090 834432 calcium-binding EF hand family protein, putative / protein phosphatase 2A 62 kDa B'' regulatory subunit, putative F:calcium ion binding;P:biological_process unknown;C:mitochondrion;MOP C.G. S.X.
0.01 5e+0 34 At5g57320 835837 villin, putative F:actin binding;P:cytoskeleton organization;C:cellular_component unknown;MOPFB C.G. S.X.
0.01 5e+0 34 At5g22100 832271 RNA cyclase family protein F:RNA-3'-phosphate cyclase activity, catalytic activity;P:biological_process unknown;C:cellular_component unknown;MBAFOP C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 1e-10 69 Glycine max Gma.7667.1.S1_at AW781737 - - 2e-11 At4g24840 - C.G. S.X.
0.02 9e-6 52 Hordeum vulgare Contig11948_at Contig11948 - - 1e-5 At4g24840 - C.G. S.X.
0.05 7e-13 77 Oryza sativa Os03g0849600 CB634287 - COG complex component, COG2 family protein 3e-2 At4g24840 - C.G. S.X.
0.20 1e-19 99 Populus trichocarpa PtpAffx.163673.1.S1_at BI130446 hypothetical protein - 3e-20 At4g24840 - C.G. S.X.
0.03 8e-2 40 Triticum aestivum Ta.14027.1.S1_at BQ804695 - - 1e-2 At4g24840 - C.G. S.X.
0.01 3e-1 36 Vitis vinifera 1606764_at CB341817 hypothetical protein LOC100245034 - 1e-15 At5g62740 band 7 family protein C.G. S.X.
0.01 2e+0 34 Zea mays ZmAffx.38.1.A1_at AI657470 - - 2e+0 At4g04423 endo-1,3(4)-beta-glucanase C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0007030 A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the Golgi apparatus.
L GO:0015031 The directed movement of proteins into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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