CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g24770

Gene name RBP31 (31-KDA RNA BINDING PROTEIN)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.82 90.9 At4g24770 828579 RBP31 (31-KDA RNA BINDING PROTEIN) Encodes a chloroplast RNA-binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). S.X. H.G.
0.92 96.0 At1g79850 844324 RPS17 (RIBOSOMAL PROTEIN S17) nuclear-encoded 30S chloroplast ribosomal protein S17 S.X. H.G.
0.90 95.1 At5g47190 834765 ribosomal protein L19 family protein F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, chloroplast stroma, chloroplast, membrane, chloroplast envelope;BOPMF S.X. H.G.
0.89 94.6 At1g64510 842759 ribosomal protein S6 family protein F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:thylakoid, chloroplast thylakoid membrane, ribosome, chloroplast;BOP S.X. H.G.
0.89 94.6 At2g33800 817947 ribosomal protein S5 family protein F:structural constituent of ribosome, RNA binding;P:response to cadmium ion, response to cold, translation;C:in 8 components;BOMAFP S.X. H.G.
0.88 94.0 At2g33450 817910 50S ribosomal protein L28, chloroplast (CL28) F:structural constituent of ribosome;P:translation;C:ribosome, chloroplast, membrane;BOPF S.X. H.G.
0.87 93.5 At3g52150 824379 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope;MPOFBA S.X. H.G.
0.87 93.5 At3g13120 820500 30S ribosomal protein S10, chloroplast, putative F:structural constituent of ribosome, RNA binding;P:translation;C:small ribosomal subunit, chloroplast;BOMAPF S.X. H.G.
0.87 93.5 At4g01310 827947 ribosomal protein L5 family protein F:structural constituent of ribosome;P:translation;C:in 6 components;BOPAFM S.X. H.G.
0.86 93.1 At1g07320 837243 RPL4 encodes a plastid ribosomal protein L4 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
11.0 99.2 E-MEXP-509-raw-cel-829148703
5.2 98.2 GSM318331 EL_14DAS_2 GSE12676 Arabidopsis thaliana Ler developmental series
4.9 98.1 GSM135551 syd-2_rep1 GSE5806 Identification of differentially expressed genes in brm-101 and syd-2 mutants
4.8 98.0 GSM269484 mkk1, no-treatment, rep-C GSE10646 BTH treated mkk1, mkk2 and mkk1/2 knockout mutant
4.8 98.0 GSM183516 MYB51_OE_rep1 GSE7570 ATR1_like_Clade_OE_and_miR
4.8 98.0 GSM318330 EL_14DAS_1 GSE12676 Arabidopsis thaliana Ler developmental series
4.7 98.0 GSM269490 mkk2, no-treatment, rep-C GSE10646 BTH treated mkk1, mkk2 and mkk1/2 knockout mutant
4.5 97.8 GSM135554 Ler_rep2 GSE5806 Identification of differentially expressed genes in brm-101 and syd-2 mutants
4.5 97.8 GSM183514 MYB29_OE_rep2 GSE7570 ATR1_like_Clade_OE_and_miR
4.5 97.8 E-TABM-18-raw-cel-489543413
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.33 1e-38 161 At5g50250 835090 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative Encodes a RNA binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). C.G. S.X.
0.03 3e-5 50 At5g04280 830307 glycine-rich RNA-binding protein F:RNA binding, zinc ion binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:nucleolus;MPFOBVA C.G. S.X.
0.02 1e-1 38 At5g56300 835729 GAMT2 (GIBBERELLIC ACID METHYLTRANSFERASE 2) A member of the Arabidopsis SABATH methyltransferase gene family. Encodes GAMT2, a methyltransferase that uses S-adenosine-L-methionine (SAM) as a methyl donor to methylate the carboxyl group of GAs, resulting in the methyl esters of GAs (MeGAs). Expressed most highly in the siliques during seed development. C.G. S.X.
0.01 1e-1 38 At3g16840 820937 ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding F:helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity;P:biological_process unknown;C:cellular_component unknown;MOBFPAV C.G. S.X.
0.02 5e-1 36 At4g14300 827071 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MBOPFVA C.G. S.X.
0.02 5e-1 36 At4g35860 829740 ATGB2 (GTP-BINDING 2) GTP-binding protein ATGB2 C.G. S.X.
0.01 2e+0 34 At5g44700 834499 GSO2 (GASSHO 2) Encodes GASSHO2 (GSO2), a putative leucine-rich repeat transmembrane-type receptor kinase. GSO2 and a homolog GSO1 (At4g20140) are required for the formation of a normal epidermal surface during embryogenesis. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 2e-29 131 Glycine max Gma.10631.1.S1_at CA783445 - - 1e-29 At4g24770 RBP31 (31-KDA RNA BINDING PROTEIN) C.G. S.X.
0.04 1e-6 54 Hordeum vulgare rbasd3a10_s_at rbasd3a10 - - 1e-6 At4g24770 RBP31 (31-KDA RNA BINDING PROTEIN) C.G. S.X.
0.12 2e-5 52 Oryza sativa Os.47913.1.A1_at - - - 0 C.G. S.X.
0.14 1e-8 61 Populus trichocarpa PtpAffx.2393.2.S1_a_at CX176954 hypothetical protein - 7e-23 At5g50250 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative C.G. S.X.
0.07 2e-6 54 Triticum aestivum Ta.28242.1.S1_at CK216078 - - 3e-9 At5g50250 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative C.G. S.X.
0.31 4e-17 87 Vitis vinifera 1617311_at CB344329 hypothetical protein LOC100257045 - 1e-16 At4g24770 RBP31 (31-KDA RNA BINDING PROTEIN) C.G. S.X.
0.12 2e-8 59 Zea mays Zm.14.1.S1_at BI430690 nucleic acid binding protein1 - 1e-8 At5g50250 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009451 The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically.
X GO:0045087 Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
S GO:0006396 Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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