CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g24750

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.88 94.0 At4g24750 828577 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOA S.X. H.G.
0.74 86.1 At4g39040 830059 RNA binding F:RNA binding;P:biological_process unknown;C:chloroplast;MOBFPVA S.X. H.G.
0.74 86.1 At3g48730 824034 GSA2 (glutamate-1-semialdehyde 2,1-aminomutase 2) F:glutamate-1-semialdehyde 2,1-aminomutase activity, pyridoxal phosphate binding, transaminase activity, catalytic activity;P:porphyrin biosynthetic process;C:chloroplast stroma, chloroplast, chloroplast envelope;BOFMAPV S.X. H.G.
0.73 85.5 At4g17560 827471 ribosomal protein L19 family protein F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, chloroplast stroma, chloroplast, membrane, chloroplast envelope;BOPMF S.X. H.G.
0.72 84.8 At5g02710 831827 unknown protein F:unknown;P:unknown;C:chloroplast;OBPA S.X. H.G.
0.70 83.5 At4g38160 829972 pde191 (pigment defective 191) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO S.X. H.G.
0.70 83.5 At3g25660 822154 glutamyl-tRNA(Gln) amidotransferase, putative F:glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity, carbon-nitrogen ligase activity, with glutamine as amido-N-donor;P:translation;C:chloroplast, chloroplast stroma;OBFMPA S.X. H.G.
0.70 83.5 At2g37660 818343 binding / catalytic/ coenzyme binding F:coenzyme binding, binding, catalytic activity;P:defense response to bacterium;C:thylakoid, apoplast, chloroplast stroma, chloroplast;BOPFAM S.X. H.G.
0.70 83.5 At5g63310 836451 NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2) Maintains intracellular dNTP levels except ATP. Plays a role in response to oxidative stress and UV. Involved in phytochrome-mediated light signaling. Participates in auxin-regulated processes, partly through the modulation of auxin transport. H-bonding with His-197 inside the nucleotide-binding pocket is critical for NDPK2 functioning. S.X. H.G.
0.69 82.9 At3g14110 820628 FLU (FLUORESCENT IN BLUE LIGHT) Encodes a novel coiled-coil, TPR domain containing protein that is localized to the chloroplast membrane and is involved in chlorophyll biosynthesis. Mutants accumulate protochlorophyllide, an intermediate in the chlorophyll biosynthesis pathway, in dark and release singlet oxygen in plastids in a controlled and non-invasive manner upon a dark/light shift. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.7 99.5 GSM133758 Lindsey_1-11_heart-stage-root_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
14.0 99.4 GSM318621 Apex_mir-3TCP_14DAS_2 GSE12691 Knockdown and overexpression of CIN-TCP genes
12.4 99.3 GSM317624 Apex_14DAS_2 GSE12676 Arabidopsis thaliana Ler developmental series
12.2 99.3 GSM318619 Apex_Col_14DAS_2 GSE12691 Knockdown and overexpression of CIN-TCP genes
12.2 99.3 GSM318331 EL_14DAS_2 GSE12676 Arabidopsis thaliana Ler developmental series
12.0 99.3 GSM318620 Apex_mir-3TCP_14DAS_1 GSE12691 Knockdown and overexpression of CIN-TCP genes
11.2 99.2 GSM183516 MYB51_OE_rep1 GSE7570 ATR1_like_Clade_OE_and_miR
10.3 99.2 GSM318627 Apex_BLS>>TCP4_14DAS_2 GSE12691 Knockdown and overexpression of CIN-TCP genes
10.2 99.2 GSM317619 Apex_14DAS_1 GSE12676 Arabidopsis thaliana Ler developmental series
9.0 99.1 GSM318626 Apex_BLS>>TCP4_14DAS_1 GSE12691 Knockdown and overexpression of CIN-TCP genes
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 7e-3 42 At1g19660 838553 wound-responsive family protein F:unknown;P:response to wounding;C:unknown;BOPA C.G. S.X.
0.01 1e-1 38 At3g56140 824780 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid lumen, chloroplast;PBMOFV C.G. S.X.
0.03 1e-1 38 At3g11940 820367 ATRPS5A (RIBOSOMAL PROTEIN 5A) One of two genes encoding the ribosomal protein S5. Mutants have semi-dominant developmental phenotypes. Most cell-division processes are delayed or disturbed in the heterozygous mutant, and development is completely arrested at an early embryonic stage in the homozygous mutant. C.G. S.X.
0.01 1e-1 38 At2g40400 818633 unknown protein F:unknown;P:unknown;C:chloroplast thylakoid lumen;PBOM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 6e-4 46 Glycine max Gma.4705.2.S1_at BG882746 - - 5e-4 At4g24750 - C.G. S.X.
0.05 5e-2 38 Hordeum vulgare Contig9660_at Contig9660 - - 1e-1 At4g24750 - C.G. S.X.
0.06 1e-2 42 Oryza sativa Os02g0596000 AK072766.1 - Rhodanese-like domain containing protein 1e-2 At4g24750 - C.G. S.X.
0.55 3e-46 186 Populus trichocarpa PtpAffx.212821.1.S1_at pmrna25090 hypothetical protein - 2e-46 At4g24750 - C.G. S.X.
0.08 5e-1 36 Triticum aestivum TaAffx.3767.3.S1_at CK211869 - - 3e-1 At4g24750 - C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1616247_at CF414434 hypothetical protein LOC100257808 - 4e-1 At1g15920 CCR4-NOT transcription complex protein, putative C.G. S.X.
0.02 7e-1 34 Zea mays Zm.8921.1.A1_at BM075327 hypothetical protein LOC100217070 - 7e-22 At1g73060 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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