Gene omics information

Query gene ID At4g24750
Gene name -
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.8894.0At4g24750828577-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOAS.X.H.G.
0.7486.1At4g39040830059RNA bindingF:RNA binding;P:biological_process unknown;C:chloroplast;MOBFPVAS.X.H.G.
0.7486.1At3g48730824034GSA2 (glutamate-1-semialdehyde 2,1-aminomutase 2)F:glutamate-1-semialdehyde 2,1-aminomutase activity, pyridoxal phosphate binding, transaminase activity, catalytic activity;P:porphyrin biosynthetic process;C:chloroplast stroma, chloroplast, chloroplast envelope;BOFMAPVS.X.H.G.
0.7385.5At4g17560827471ribosomal protein L19 family proteinF:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, chloroplast stroma, chloroplast, membrane, chloroplast envelope;BOPMFS.X.H.G.
0.7284.8At5g02710831827unknown proteinF:unknown;P:unknown;C:chloroplast;OBPAS.X.H.G.
0.7083.5At4g38160829972pde191 (pigment defective 191)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOS.X.H.G.
0.7083.5At3g25660822154glutamyl-tRNA(Gln) amidotransferase, putativeF:glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity, carbon-nitrogen ligase activity, with glutamine as amido-N-donor;P:translation;C:chloroplast, chloroplast stroma;OBFMPAS.X.H.G.
0.7083.5At2g37660818343binding / catalytic/ coenzyme bindingF:coenzyme binding, binding, catalytic activity;P:defense response to bacterium;C:thylakoid, apoplast, chloroplast stroma, chloroplast;BOPFAMS.X.H.G.
0.7083.5At5g63310836451NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2)Maintains intracellular dNTP levels except ATP. Plays a role in response to oxidative stress and UV. Involved in phytochrome-mediated light signaling. Participates in auxin-regulated processes, partly through the modulation of auxin transport. H-bonding with His-197 inside the nucleotide-binding pocket is critical for NDPK2 functioning.S.X.H.G.
0.6982.9At3g14110820628FLU (FLUORESCENT IN BLUE LIGHT)Encodes a novel coiled-coil, TPR domain containing protein that is localized to the chloroplast membrane and is involved in chlorophyll biosynthesis. Mutants accumulate protochlorophyllide, an intermediate in the chlorophyll biosynthesis pathway, in dark and release singlet oxygen in plastids in a controlled and non-invasive manner upon a dark/light shift.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
16.799.5GSM133758Lindsey_1-11_heart-stage-root_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
14.099.4GSM318621Apex_mir-3TCP_14DAS_2GSE12691Knockdown and overexpression of CIN-TCP genes
12.499.3GSM317624Apex_14DAS_2GSE12676Arabidopsis thaliana Ler developmental series
12.299.3GSM318619Apex_Col_14DAS_2GSE12691Knockdown and overexpression of CIN-TCP genes
12.299.3GSM318331EL_14DAS_2GSE12676Arabidopsis thaliana Ler developmental series
12.099.3GSM318620Apex_mir-3TCP_14DAS_1GSE12691Knockdown and overexpression of CIN-TCP genes
10.399.2GSM318627Apex_BLS>>TCP4_14DAS_2GSE12691Knockdown and overexpression of CIN-TCP genes
10.299.2GSM317619Apex_14DAS_1GSE12676Arabidopsis thaliana Ler developmental series
9.099.1GSM318626Apex_BLS>>TCP4_14DAS_1GSE12691Knockdown and overexpression of CIN-TCP genes
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.027e-342At1g19660838553wound-responsive family proteinF:unknown;P:response to wounding;C:unknown;BOPAC.G.S.X.
0.011e-138At3g56140824780unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid lumen, chloroplast;PBMOFVC.G.S.X.
0.031e-138At3g11940820367ATRPS5A (RIBOSOMAL PROTEIN 5A)One of two genes encoding the ribosomal protein S5. Mutants have semi-dominant developmental phenotypes. Most cell-division processes are delayed or disturbed in the heterozygous mutant, and development is completely arrested at an early embryonic stage in the homozygous mutant.C.G.S.X.
0.011e-138At2g40400818633unknown proteinF:unknown;P:unknown;C:chloroplast thylakoid lumen;PBOMC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.116e-446Glycine maxGma.4705.2.S1_atBG882746--5e-4At4g24750-C.G.S.X.
0.055e-238Hordeum vulgareContig9660_atContig9660--1e-1At4g24750-C.G.S.X.
0.061e-242Oryza sativaOs02g0596000AK072766.1-Rhodanese-like domain containing protein1e-2At4g24750-C.G.S.X.
0.553e-46186Populus trichocarpaPtpAffx.212821.1.S1_atpmrna25090hypothetical protein-2e-46At4g24750-C.G.S.X.
0.085e-136Triticum aestivumTaAffx.3767.3.S1_atCK211869--3e-1At4g24750-C.G.S.X.
0.032e+032Vitis vinifera1616247_atCF414434hypothetical protein LOC100257808-4e-1At1g15920CCR4-NOT transcription complex protein, putativeC.G.S.X.
0.027e-134Zea maysZm.8921.1.A1_atBM075327hypothetical protein LOC100217070-7e-22At1g73060unknown proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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