CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g24700

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g24700 828572 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
1.00 100.0 At2g21195 816656 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;P S.X. H.G.
0.96 97.3 At1g15080 838072 LPP2 (LIPID PHOSPHATE PHOSPHATASE 2) Encodes phosphatidic acid phosphatase. Involved in ABA signaling. Functions as a negative regulator upstream of ABI4. Expressed during germination and seed development. Expressed overall in young seedlings, in roots, hypocotyls, and vascular cells of cotyledons and leaves of 10 day-old seedlings, in flower filaments and stem elongation zones. Not expressed in anthers, pollen nor petals. S.X. H.G.
0.96 97.3 At2g38880 818472 NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1) Encodes a transcription factor from the nuclear factor Y (NF-Y) family, AtNF-YB1. Confers drought tolerance. S.X. H.G.
0.96 97.3 At1g07970 837312 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOB S.X. H.G.
0.93 96.4 At3g62330 825406 zinc knuckle (CCHC-type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFPBV S.X. H.G.
0.93 96.4 At4g01570 828133 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POFMBA S.X. H.G.
0.93 96.4 At4g19400 827681 actin binding F:actin binding;P:cytoskeleton organization;C:actin cytoskeleton;PO S.X. H.G.
0.93 96.4 At5g18570 831975 GTP1/OBG family protein F:GTP binding, nucleotide binding;P:unknown;C:intracellular, chloroplast;BOMFAPV S.X. H.G.
0.92 96.0 At2g20740 816603 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane;PO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2692.9 100.0 GSM133757 Lindsey_1-8_heart-stage-cotyledon_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
30.7 99.7 E-ATMX-33-raw-cel-1562596264
14.4 99.4 GSM142663 NE001_ATH1_A1-Evans-w20 GSE6154 Molecular basis of respiratory burst-mediated thermotolerance in Arabidopsis
13.7 99.4 GSM142816 SS002_ATH1_A8-smith-14h GSE6174 Gene expression and carbohydrate metabolism through the diurnal cycle
13.7 99.4 E-ATMX-33-raw-cel-1562596288
11.9 99.3 GSM142666 NE001_ATH1_A4-Evans-m20 GSE6154 Molecular basis of respiratory burst-mediated thermotolerance in Arabidopsis
11.2 99.2 GSM133833 Walters_A-12-Kruger-MH3_REP3 GSE5737 Carbohydrate- and redox-regulation of gene expression in a TPT mutant
11.1 99.2 GSM131255 AtGen_6-0611_Control-Shoots-24.0h_Rep1 GSE5620 AtGenExpress: Stress Treatments (Control plants)
10.9 99.2 E-ATMX-33-raw-cel-1562596310
10.3 99.2 GSM131468 AtGen_6-9612_Heatstress(3h)+21hrecovery-Shoots-24.0h_Rep2 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 3e-3 42 At5g53290 835410 CRF3 (CYTOKININ RESPONSE FACTOR 3) encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. C.G. S.X.
0.01 3e-3 42 At3g18110 821336 EMB1270 (embryo defective 1270) F:unknown;P:embryonic development ending in seed dormancy;C:chloroplast;POMFBA C.G. S.X.
0.03 1e-2 40 At5g53090 835389 binding / catalytic/ oxidoreductase F:oxidoreductase activity, binding, catalytic activity;P:multicellular organismal development, metabolic process;C:cellular_component unknown;BOMFPA C.G. S.X.
0.02 1e-2 40 At5g50970 835170 WD-40 repeat family protein F:unknown;P:biological_process unknown;C:cellular_component unknown;MOBFP C.G. S.X.
0.04 1e-2 40 At5g59000 836017 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOFPVBA C.G. S.X.
0.01 1e-2 40 At5g41740 834177 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, chloroplast;PMBOFA C.G. S.X.
0.02 1e-2 40 At5g51770 835251 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;PMOFBVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 7e-2 38 Glycine max GmaAffx.85644.1.A1_at CA938743 - - 6e-2 At5g61270 PIF7 (PHYTOCHROME-INTERACTING FACTOR7) C.G. S.X.
0.06 7e-3 40 Hordeum vulgare HF21N04r_at HF21N04r - - 2e+0 At4g19150 ankyrin repeat family protein C.G. S.X.
0.06 4e-1 36 Oryza sativa OsAffx.22184.1.S1_at - - - 0 C.G. S.X.
0.04 7e-2 38 Populus trichocarpa PtpAffx.20179.2.S1_at CK106413 hypothetical protein - 1e+0 At1g16240 SYP51 (SYNTAXIN OF PLANTS 51) C.G. S.X.
0.05 2e-1 36 Triticum aestivum TaAffx.71195.1.S1_at BE492326 - - 1e-2 At2g40830 RHC1A C.G. S.X.
0.04 6e-2 36 Vitis vinifera 1608002_s_at CF209324 hypothetical protein LOC100259302 - 4e+0 At3g13229 unknown protein C.G. S.X.
0.05 4e-1 34 Zea mays ZmAffx.283.1.A1_at AI670414 - - 3e+0 At3g23175 lesion inducing protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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