CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g24180

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.53 68.6 At4g24180 828519 - F:molecular_function unknown;P:response to other organism;C:endomembrane system;PMFBOV S.X. H.G.
0.89 94.6 At1g31050 839991 transcription factor F:transcription factor activity;P:regulation of transcription;C:nucleus;P S.X. H.G.
0.43 55.3 At3g12090 820383 TET6 (TETRASPANIN6) Member of TETRASPANIN family S.X. H.G.
0.33 38.1 At3g47210 823874 unknown protein F:unknown;P:biological_process unknown;C:plasma membrane;PM S.X. H.G.
0.29 30.3 At3g49860 824148 ATARLA1B (ADP-ribosylation factor-like A1B) A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
148.5 99.9 GSM184497 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
79.6 99.9 GSM184501 Endodermis&Pericycle root cells 2hr continuous KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
68.8 99.9 GSM184498 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
60.5 99.8 GSM184499 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
57.5 99.8 GSM184495 Endodermis&Pericycle root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
56.2 99.8 GSM218587 Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
50.4 99.8 GSM290759 root - 01% oxygen - 48h - F GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
47.6 99.8 GSM218585 Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
47.3 99.8 GSM184500 Endodermis&Pericycle root cells 2hr continuous KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
44.2 99.8 GSM184509 Pericycle root cells 2hr continuous KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.13 1e-7 57 At4g36000 829756 - F:molecular_function unknown;P:response to other organism;C:cellular_component unknown;PMFBOV C.G. S.X.
0.03 4e-7 56 At5g38280 833810 PR5K putative receptor serine/threonine kinase PR5K (PR5K) mRNA, PR5-like receptor kinase C.G. S.X.
0.04 3e-5 50 At5g40020 833999 pathogenesis-related thaumatin family protein F:molecular_function unknown;P:response to other organism;C:endomembrane system;PFMBO C.G. S.X.
0.04 1e-4 48 At1g75030 843841 ATLP-3 encodes a PR5-like protein C.G. S.X.
0.08 4e-4 46 At1g75800 843913 pathogenesis-related thaumatin family protein F:molecular_function unknown;P:response to other organism;C:endomembrane system;PMFBOVA C.G. S.X.
0.05 4e-4 46 At1g19320 838514 pathogenesis-related thaumatin family protein F:molecular_function unknown;P:response to other organism;C:endomembrane system;PMFBOV C.G. S.X.
0.18 2e-3 44 At4g38660 830022 thaumatin, putative F:molecular_function unknown;P:response to other organism;C:anchored to membrane;PFMBOV C.G. S.X.
0.04 2e-3 44 At2g24810 817018 pathogenesis-related thaumatin family protein F:molecular_function unknown;P:response to other organism;C:endomembrane system;PMFBO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.24 9e-9 61 Glycine max Gma.1910.1.S1_at CD410684 - - 1e-8 At4g24180 - C.G. S.X.
0.04 1e-8 59 Hordeum vulgare Contig10686_s_at Contig10686 - - 4e-8 At4g24180 - C.G. S.X.
0.07 5e-5 50 Oryza sativa OsAffx.17498.1.S1_at - - - 0 C.G. S.X.
0.06 1e-1 38 Populus trichocarpa PtpAffx.201602.1.S1_at pmrna3149 hypothetical protein - 2e-5 At4g38660 thaumatin, putative C.G. S.X.
0.05 7e-6 52 Triticum aestivum TaAffx.32415.1.S1_at CA595349 - - 1e-3 At1g75030 ATLP-3 C.G. S.X.
0.07 5e-7 54 Vitis vinifera 1606517_at CB347191 hypothetical protein LOC100247111 - 5e-5 At1g20030 pathogenesis-related thaumatin family protein C.G. S.X.
0.04 3e-6 52 Zea mays Zm.12137.1.S1_at CO524051 thaumatin-like protein 1 - 2e-1 At4g36010 pathogenesis-related thaumatin family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0051707 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from another living organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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