Gene omics information

Query gene ID At4g24120
Gene name YSL1 (YELLOW STRIPE LIKE 1)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At4g24120828512YSL1 (YELLOW STRIPE LIKE 1)Member of a small family of oligopeptide transporters similar to the yellow stripe locus of maize (ZmYS1).S.X.H.G.
0.2420.7At2g35940818167BLH1 (BEL1-LIKE HOMEODOMAIN 1)Encodes a member of the BEL-like homeodomain protein family. Ecotopic expression in the embryo sac leads to defects in nuclear migration and cellularization and embryo sacs with multiple egg cells. Loss of function alleles have no female gametophyte defects. The ecotopic expression phenotype requires KNAT3 because it can be suppressed by loss of KNAT3 function alleles. Localized to the nucleus but interaction with OFP1 relocates it to the cytoplasm.S.X.H.G.
0.2319.3At4g12300826839CYP706A4member of CYP706AS.X.H.G.
0.1811.4At5g20280832150ATSPS1F (sucrose phosphate synthase 1F)Encodes a protein with putative sucrose-phosphate synthase activity. When the gene was expressed in transgenic tobacco plants, a clear trend for increased SPS activity was noted.S.X.H.G.
0.1710.2At5g62680836389proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:plasma membrane, membrane;PMBFOS.X.H.G.
0.157.8At5g02620831855ankyrin repeat family proteinF:protein binding;P:unknown;C:plasma membrane;MOFBPVAS.X.H.G.
0.157.8At2g26740817215ATSEH (Arabidopsis thaliana soluble epoxide hydrolase)Encodes a soluble epoxide hydrolase whose expression is induced by auxin and water stress.S.X.H.G.
0.146.8At5g61520836273hexose transporter, putativeF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOAS.X.H.G.
0.114.1At3g28050822429nodulin MtN21 family proteinF:unknown;P:biological_process unknown;C:endomembrane system, membrane;PBOAFMS.X.H.G.
0.103.4At2g31820817739ankyrin repeat family proteinF:protein binding;P:unknown;C:plasma membrane;MOFBPVAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
148.499.9GSM131603ATGE_41_AGSE5632AtGenExpress: Developmental series (flowers and pollen)
141.799.9GSM131604ATGE_41_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
136.899.9GSM142631MC002_ATH1_A3.3-dubos-6kxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
127.799.9GSM131608ATGE_42_DGSE5632AtGenExpress: Developmental series (flowers and pollen)
114.699.9GSM131605ATGE_41_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
100.599.9GSM142630MC002_ATH1_A3.2-dubos-6kxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
97.699.9GSM131607ATGE_42_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
97.299.9GSM131606ATGE_42_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
95.399.9GSM142623MC002_ATH1_A1.1-dubos-wtxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
90.899.9GSM142624MC002_ATH1_A1.2-dubos-wtxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.183e-1067At5g53550835437YSL3 (YELLOW STRIPE LIKE 3)F:oligopeptide transporter activity;P:oligopeptide transport, response to nematode;C:unknown;BPFOAVC.G.S.X.
0.113e-757At5g24380832509YSL2 (YELLOW STRIPE LIKE 2)closest Arabidopsis homolog of Zea maize metal-phytosiderophore/metal-nicotianamine transporter ZmYS1C.G.S.X.
0.063e-757At3g17650821032YSL5 (YELLOW STRIPE LIKE 5)Arabidopsis thaliana metal-nicotianamine transporter YSL5C.G.S.X.
0.021e-346At1g65730842884YSL7 (YELLOW STRIPE LIKE 7)Arabidopsis thaliana metal-nicotianamine transporter YSL4C.G.S.X.
0.042e-242At1g48370841257YSL8 (YELLOW STRIPE LIKE 8)Arabidopsis thaliana metal-nicotianamine transporter YSL4C.G.S.X.
0.013e-138At5g57015835804ckl12 (Casein Kinase I-like 12)F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytoplasm;MOPBFVAC.G.S.X.
0.023e-138At3g455773769654tRNA-intron endonucleaseF:tRNA-intron endonuclease activity;P:tRNA splicing, via endonucleolytic cleavage and ligation;C:tRNA-intron endonuclease complex;MPC.G.S.X.
0.013e-138At3g15120820743AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;MOBFPAVC.G.S.X.
0.023e-138At1g31620840049unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.046e-344Glycine maxGma.9704.1.S1_atCD397969--1e-8At5g24380YSL2 (YELLOW STRIPE LIKE 2)C.G.S.X.
0.028e-342Hordeum vulgareContig16506_atContig16506--1e-13At3g27020YSL6 (YELLOW STRIPE LIKE 6)C.G.S.X.
0.091e-759Oryza sativaOs04g0542200AK120923.1-Oligopeptide transporter OPT superfamily protein6e-9At5g24380YSL2 (YELLOW STRIPE LIKE 2)C.G.S.X.
0.044e-448Populus trichocarpaPtpAffx.203789.1.S1_atpmrna7477oligopeptide transporter OPT family-7e-39At3g17650YSL5 (YELLOW STRIPE LIKE 5)C.G.S.X.
0.043e-448Triticum aestivumTaAffx.55509.1.S1_atCA665154--7e-5At4g24120YSL1 (YELLOW STRIPE LIKE 1)C.G.S.X.
0.063e-1065Vitis vinifera1622720_s_atBQ794584YS1-like protein-like-8e-10At4g24120YSL1 (YELLOW STRIPE LIKE 1)C.G.S.X.
0.053e-240Zea maysZm.582.1.S1_atAF186234.2yellow stripe1-3e-1At5g24380YSL2 (YELLOW STRIPE LIKE 2)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0010039A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron ion stimulus.
CGO:0006857The directed movement of oligopeptides into, out of, within or between cells. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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