CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g24110

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.61 76.7 At4g24110 828511 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM S.X. H.G.
0.91 95.6 At5g66985 836833 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.88 94.0 At4g33070 829444 pyruvate decarboxylase, putative F:in 6 functions;P:unknown;C:membrane;BOFPAMV S.X. H.G.
0.86 93.1 At2g17850 816295 - F:molecular_function unknown;P:aging;C:endomembrane system;BOPAMF S.X. H.G.
0.86 93.1 At5g10040 830868 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.80 89.8 At1g33055 840201 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.80 89.8 At4g10270 826619 wound-responsive family protein F:molecular_function unknown;P:response to wounding;C:unknown;P S.X. H.G.
0.79 89.1 At2g29870 817537 major intrinsic family protein / MIP family protein F:water channel activity;P:transport;C:membrane;BPMOFA S.X. H.G.
0.78 88.6 At4g33560 829495 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.78 88.6 At5g39890 833986 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
134.7 99.9 GSM184530 Stele root cells 2hr continuous KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
120.8 99.9 GSM290755 root - 01% oxygen - 2h - F GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
119.6 99.9 GSM184508 Pericycle root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
95.3 99.9 GSM142594 DB001_ATH1_A4-Brown-cal GSE6148 The trans-differentiation of cultured Arabidopsis cells
87.3 99.9 GSM290753 root - 01% oxygen - 2h - E GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
79.5 99.9 GSM142592 DB001_ATH1_A2-Brown-cal GSE6148 The trans-differentiation of cultured Arabidopsis cells
66.4 99.8 GSM142596 DB001_ATH1_A6-Brown-cal GSE6148 The trans-differentiation of cultured Arabidopsis cells
59.5 99.8 GSM142593 DB001_ATH1_A3-Brown-cal GSE6148 The trans-differentiation of cultured Arabidopsis cells
55.6 99.8 GSM184522 Stele root cells 2hr KCl control treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
52.5 99.8 GSM184505 Pericycle root cells 2hr KCl control treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.04 1e-4 48 At5g51650 835239 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFB C.G. S.X.
0.01 2e-2 40 At4g24800 828582 MA3 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF C.G. S.X.
0.03 2e-2 40 At3g29075 822552 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA C.G. S.X.
0.03 9e-2 38 At3g17611 821028 ATRBL14 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 14) F:zinc ion binding;P:biological_process unknown;C:integral to membrane, intracellular;BOPMFAV C.G. S.X.
0.02 4e-1 36 At3g56570 824824 SET domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA C.G. S.X.
0.03 4e-1 36 At3g25910 822188 zinc ion binding F:zinc ion binding;P:biological_process unknown;C:intracellular;MPOFBV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-2 40 Glycine max Gma.4312.3.S1_at BF424240 - - 4e-3 At2g25080 ATGPX1 (GLUTATHIONE PEROXIDASE 1) C.G. S.X.
0.04 7e-4 44 Hordeum vulgare Contig25984_at Contig25984 - - 9e-1 At4g24380 unknown protein C.G. S.X.
0.03 2e-1 38 Oryza sativa Os10g0570100 9638.m03840 - - 2e+0 At1g58420 - C.G. S.X.
0.11 8e-3 42 Populus trichocarpa PtpAffx.200326.1.S1_x_at pmrna649 hypothetical protein - 6e-3 At4g24110 unknown protein C.G. S.X.
0.04 4e-1 36 Triticum aestivum TaAffx.27399.1.S1_at CA677291 - - 8e-3 At5g64667 IDL2 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 2) C.G. S.X.
0.05 5e-7 54 Vitis vinifera 1621032_at CD797702 hypothetical protein LOC100266707 - 2e-6 At4g24110 unknown protein C.G. S.X.
0.03 4e-2 38 Zea mays Zm.6532.7.A1_x_at BM075609 dehydrin 13 - 4e-1 At2g21490 LEA (DEHYDRIN LEA) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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