CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g24050

Gene name short-chain dehydrogenase/reductase (SDR) family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g24050 828505 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA S.X. H.G.
0.35 41.6 At1g54170 841857 CID3 (CTC-Interacting Domain 3) ataxin-2-related, similar to SCA2 (GI:1770390) (Homo sapiens); similar to ataxin-2 (GI:3005020) (Mus musculus). Member of a family of PAM2 motif containing proteins. S.X. H.G.
0.34 39.8 At5g06780 830567 emsy N terminus domain-containing protein / ENT domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
0.32 35.7 At1g07470 837259 transcription factor IIA large subunit, putative / TFIIA large subunit, putative F:RNA polymerase II transcription factor activity, transcription factor activity;P:transcription initiation from RNA polymerase II promoter, transcription;C:transcription factor TFIIA complex;MFPOBV S.X. H.G.
0.31 33.8 At2g17350 816242 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMFB S.X. H.G.
0.31 33.8 At3g62140 825387 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPB S.X. H.G.
0.29 30.3 At4g37180 829872 myb family transcription factor myb family transcription factor, contains Pfam domain, PF00249: Myb-like DNA-binding domain l; also isolated as a putative cytoskeletal protein in a yeast screen S.X. H.G.
0.29 30.3 At2g13370 815823 CHR5 (chromatin remodeling 5) F:chromatin binding, helicase activity, DNA binding, nucleic acid binding, ATP binding;P:chromatin assembly or disassembly;C:chromatin, nucleus;OMBFPVA S.X. H.G.
0.29 30.3 At4g30630 829186 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.29 30.3 At5g54730 835562 AtATG18f F:molecular_function unknown;P:response to starvation;C:chloroplast;MFPOB S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
366.2 100.0 GSM311294 Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
216.9 100.0 GSM311293 Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
132.4 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
62.9 99.8 GSM284394 Arabidopsis GCE3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
58.6 99.8 GSM284392 Arabidopsis GCE1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
58.2 99.8 GSM62703 arf6 arf8 flowers_stage 11-12 GSE2848 Auxin Response Factor mediated flower gene expression
57.3 99.8 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
55.1 99.8 GSM253198 RGA-GR-DEX-REP3 GSE10019 Identification of RGA downstream genes by using steroid-inducible system
53.0 99.8 GSM62704 arf6 arf8 flowers_stage 13-14 GSE2848 Auxin Response Factor mediated flower gene expression
49.2 99.8 GSM245254 4hr MOCK Replicate 1 GSE9702 Identification of putative targets of AP3/PI
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.17 6e-10 65 At1g64590 842767 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA C.G. S.X.
0.03 8e-3 42 At1g35430 840435 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P C.G. S.X.
0.03 1e-1 38 At5g50130 835078 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPA C.G. S.X.
0.01 1e-1 38 At5g43930 834415 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:chloroplast;MBFOPA C.G. S.X.
0.02 1e-1 38 At5g03380 831854 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:unknown;PMOBFA C.G. S.X.
0.03 1e-1 38 At2g37540 818330 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 5e-11 69 Glycine max GmaAffx.38919.2.S1_at BQ297471 - - 2e-11 At4g24050 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.02 9e-1 34 Hordeum vulgare Contig12058_at Contig12058 - - 4e-13 At2g33430 DAL1 (DIFFERENTIATION AND GREENING-LIKE 1) C.G. S.X.
0.09 1e-6 56 Oryza sativa Os03g0115700 AK067473.1 - Short-chain dehydrogenase/reductase SDR familyprotein 1e-8 At1g64590 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.30 2e-10 67 Populus trichocarpa PtpAffx.200349.1.S1_at pmrna691 hypothetical protein - 1e-10 At4g24050 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.5679.1.S1_at CA702851 - - 3e-1 At4g29980 unknown protein C.G. S.X.
0.02 6e-1 34 Vitis vinifera 1616628_at CK136902.1 hypothetical protein LOC100258493 - 4e-3 At2g02060 transcription factor C.G. S.X.
0.02 3e+0 32 Zea mays Zm.19215.2.A1_at BG321066 - - 2e-12 At1g30480 DRT111 C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage