Gene omics information

Query gene ID At4g24040
Gene name TRE1 (TREHALASE 1)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.8894.0At4g24040828504TRE1 (TREHALASE 1)Encodes a trehalase, member of Glycoside Hydrolase Family 37.S.X.H.G.
0.7788.0At3g11750820348dihydroneopterin aldolase, putativeF:dihydroneopterin aldolase activity;P:folic acid and derivative metabolic process;C:unknown;BOPAFS.X.H.G.
0.7486.1At1g76720844006GTP binding / GTPase/ translation initiation factorF:GTP binding, GTPase activity, translation initiation factor activity;P:translational initiation;C:cellular_component unknown;MOBFPAVS.X.H.G.
0.7486.1At2g37420818318kinesin motor protein-relatedF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOBFPAVS.X.H.G.
0.7385.5At3g52780824444PAP20F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBOMFAS.X.H.G.
0.7385.5At4g39955830156hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:plasma membrane;BOMPAFS.X.H.G.
0.7385.5At3g13640820568ATRLI1member of RLI subfamilyS.X.H.G.
0.7284.8At1g28030839696oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:2-oxoglutarate-dependent dioxygenase activity;P:biological_process unknown;C:cellular_component unknown;POBFMS.X.H.G.
0.6982.9At2g26870817228phosphoesterase family proteinF:hydrolase activity, acting on ester bonds;P:triglyceride biosynthetic process, phospholipid biosynthetic process;C:endomembrane system;BFPOAS.X.H.G.
0.6982.9At1g20140838604ASK4 (ARABIDOPSIS SKP1-LIKE 4)F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex, nucleolus, nucleus, cytoplasm;MPOFVS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
353.8100.0GSM284394Arabidopsis GCE3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
324.4100.0GSM311280Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
280.8100.0GSM284392Arabidopsis GCE1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
198.9100.0E-MEXP-1443-raw-cel-1581869515
186.8100.0GSM284393Arabidopsis GCE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
180.5100.0GSM284387Arabidopsis GSUS4bGSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
167.8100.0GSM311279Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
148.399.9GSM311293Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
142.899.9GSM284386Arabidopsis GSUS3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
109.799.9GSM10477lec1-1 24-Hr Seed 1GSE1051Seed development in LEAFY COTYLEDON1 mutants
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.011e-242At5g44480834475DUR (DEFECTIVE UGE IN ROOT)mutant has Altered lateral root; UDP Glucose EpimeraseC.G.S.X.
0.016e-240At4g13340826964leucine-rich repeat family protein / extensin family proteinF:structural constituent of cell wall, protein binding;P:unknown;C:cell wall, plant-type cell wall;MBPOFVAC.G.S.X.
0.022e-138At5g59150836033ATRABA2D (HOARABIDOPSIS RAB GTPASE HOMOLOG A2D)F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:endosome, plasma membrane, cell plate;MOFPBVAC.G.S.X.
0.002e-138At5g40820834082ATRAD3Encodes a Arabidopsis ortholog of the ATR protein kinase that is involved in a wide range of responses to DNA damage and plays a central role in cell-cycle regulation. Dominant loss of function alleles identified as suppressors of ALS also exhibit increased tolerance to aluminum. This may be due to the inhibition of terminal differentiation of the root apex upon exposure to Al.C.G.S.X.
0.012e-138At2g20320816551-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBC.G.S.X.
0.019e-136At5g35190833473proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVAC.G.S.X.
0.019e-136At5g12240831099unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.019e-136At5g61740836296ATATH14member of ATH subfamilyC.G.S.X.
0.029e-136At4g242316240980unknown proteinF:unknown;P:unknown;C:unknownC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.111e-1689Glycine maxGma.136.1.S1_atAF124148.1trehalase 1 GMTRE1-8e-17At4g24040TRE1 (TREHALASE 1)C.G.S.X.
0.012e+034Hordeum vulgareHW07D08u_s_atHW07D08u--2e-5At3g61440CYSC1 (CYSTEINE SYNTHASE C1)C.G.S.X.
0.031e-140Oryza sativaOs10g0521000AK108163.1-Glycoside hydrolase, family 37 protein7e-2At4g24040TRE1 (TREHALASE 1)C.G.S.X.
0.091e-656Populus trichocarpaPtpAffx.30525.1.A1_atCV272246hypothetical protein-4e-7At4g24040TRE1 (TREHALASE 1)C.G.S.X.
0.022e-138Triticum aestivumTaAffx.5766.1.S1_atCA699399--4e+0At3g49270unknown proteinC.G.S.X.
0.035e-342Vitis vinifera1608156_atCF207998hypothetical protein LOC100246241-7e-3At4g24040TRE1 (TREHALASE 1)C.G.S.X.
0.062e-344Zea maysZm.3423.1.A1_atAY110813.1hypothetical protein LOC100280412-3e-3At4g24040TRE1 (TREHALASE 1)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0005993The chemical reactions and pathways resulting in the breakdown of trehalose, a disaccharide isomeric with sucrose and obtained from certain lichens and fungi.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00412Link to KaPPA-View 4Glycoside Hydrolase



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
00500Link to KEGG PATHWAYStarch and sucrose metabolism
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