CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g24020

Gene name NLP7 (NIN LIKE PROTEIN 7)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At4g24020 828502 NLP7 (NIN LIKE PROTEIN 7) Encodes NIN Like Protein 7 (NLP7). Modulates nitrate sensing and metabolism. Mutants of NLP7 show features of nitrogen-starved plants and are tolerant to drought stress. Localized in the nucleus and functions as a putative transcription factor. S.X. H.G.
0.15 7.8 At3g14090 820625 ATEXO70D3 (exocyst subunit EXO70 family protein D3) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. S.X. H.G.
0.13 5.8 At1g01440 837155 extra-large G-protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFB S.X. H.G.
0.11 4.1 At1g53570 841792 MAP3KA MEK kinase (MAP3Ka) S.X. H.G.
0.09 2.8 At1g27320 839621 AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) Encodes a histidine kinases, a cytokinin receptor that controls cytokinin-mediated leaf longevity through a specific phosphorylation of the response regulator, ARR2. S.X. H.G.
0.07 1.9 At4g32040 829335 KNAT5 (KNOTTED1-LIKE HOMEOBOX GENE 5) A member of Class II KN1-like homeodomain transcription factors factors (together with KNAT3 and KNAT4), with greatest homology to the maize knox1 homeobox protein. Regulates photomorphogenic responses and represses late steps in gibberellin biosynthesis. KNAT5 promoter activity showed cell-type specific pattern along longitudinal root axis, primarily in the epidermis of the distal end of primary root elongation zone. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
53.0 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
47.0 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.4 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
42.5 99.8 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
38.7 99.8 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
36.6 99.7 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
31.9 99.7 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
29.4 99.7 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
26.9 99.7 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
24.9 99.6 GSM128661 Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.14 3e-26 121 At1g64530 842761 RWP-RK domain-containing protein F:transcription factor activity;P:unknown;C:unknown;PMO C.G. S.X.
0.02 1e-10 69 At4g38340 829991 RWP-RK domain-containing protein F:transcription factor activity;P:regulation of transcription;C:unknown;POFB C.G. S.X.
0.01 9e-2 40 At2g41680 818766 NTRC (NADPH-DEPENDENT THIOREDOXIN REDUCTASE C) Encodes a NADPH thioredoxin reductase involved in chloroplast protection against oxidative damage. C.G. S.X.
0.01 4e-1 38 At5g41360 834138 XPB2 Encodes XPB2, a DNA repair protein and transcription factor. Arabidopsis thaliana has duplicated XPB gene (AtXPB1 and AtXPB2, with high similarity to each other). XPB proteins are involved in both DNA repair and transcription, they are component of the transcription factor IIH (TFIIH) and are responsible for DNA helicase activity during nucleotide (nt) excision repair (NER). Complementation assays in yeast rad25 mutant strains suggest the involvement of AtXPB2 in DNA repair. Although both genes are expressed in a constitutive manner during the plant life cycle, Northern blot analyses suggest that light modulates the expression level of both XPB copies. C.G. S.X.
0.01 4e-1 38 At2g01505 814679 CLE16 (CLAVATA3/ESR-RELATED 16) Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. C.G. S.X.
0.01 1e+0 36 At5g15300 831382 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB C.G. S.X.
0.01 1e+0 36 At5g05260 830408 CYP79A2 (CYTOCHROME P450 79A2) Encodes cytochrome P450 CYP79A2. C.G. S.X.
0.01 1e+0 36 At5g09730 830833 BXL3 (beta-xylosidase 3) encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members. C.G. S.X.
0.01 1e+0 36 At3g42060 823174 myosin heavy chain-related F:molecular_function unknown;P:biological_process unknown;C:unknown;PF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e-4 48 Glycine max GmaAffx.29434.1.S1_at BG508620 - - 8e-1 At1g64530 RWP-RK domain-containing protein C.G. S.X.
0.02 7e-4 46 Hordeum vulgare Contig13988_at Contig13988 - - 5e-4 At4g24020 NLP7 (NIN LIKE PROTEIN 7) C.G. S.X.
0.09 8e-7 57 Oryza sativa Os01g0236700 AK067319.1 - - 3e-17 At1g64530 RWP-RK domain-containing protein C.G. S.X.
0.07 5e-4 48 Populus trichocarpa Ptp.1008.1.A1_at CV242659 hypothetical protein - 8e-5 At4g24020 NLP7 (NIN LIKE PROTEIN 7) C.G. S.X.
0.05 3e-5 52 Triticum aestivum TaAffx.56523.1.S1_at CA649888 - - 4e-6 At4g24020 NLP7 (NIN LIKE PROTEIN 7) C.G. S.X.
0.01 2e+0 34 Vitis vinifera 1621951_at BQ795175 hypothetical protein LOC100252259 - 3e-1 At5g38050 unknown protein C.G. S.X.
0.01 3e+0 34 Zea mays Zm.2848.1.S1_at BE639815 - - 5e-1 At1g19060 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009414 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water.
X GO:0010118 The process of opening or closing of stomata, which is directly related to the stomatal conductance (measuring rate of passage of either water vapor or carbon dioxide (CO2) through stomata).
X GO:0010167 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitrate stimulus.
X GO:0042128 The uptake, from the environment, of nitrates, inorganic or organic salts and esters of nitric acid and the subsequent reduction of nitrate ion to other, less highly oxidized, inorganic nitrogenous substances.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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