Gene omics information

Query gene ID At4g24020
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5065.3At4g24020828502NLP7 (NIN LIKE PROTEIN 7)Encodes NIN Like Protein 7 (NLP7). Modulates nitrate sensing and metabolism. Mutants of NLP7 show features of nitrogen-starved plants and are tolerant to drought stress. Localized in the nucleus and functions as a putative transcription factor.S.X.H.G.
0.157.8At3g14090820625ATEXO70D3 (exocyst subunit EXO70 family protein D3)A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.S.X.H.G.
0.135.8At1g01440837155extra-large G-protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBS.X.H.G.
0.114.1At1g53570841792MAP3KAMEK kinase (MAP3Ka)S.X.H.G.
0.092.8At1g27320839621AHK3 (ARABIDOPSIS HISTIDINE KINASE 3)Encodes a histidine kinases, a cytokinin receptor that controls cytokinin-mediated leaf longevity through a specific phosphorylation of the response regulator, ARR2.S.X.H.G.
0.071.9At4g32040829335KNAT5 (KNOTTED1-LIKE HOMEOBOX GENE 5)A member of Class II KN1-like homeodomain transcription factors factors (together with KNAT3 and KNAT4), with greatest homology to the maize knox1 homeobox protein. Regulates photomorphogenic responses and represses late steps in gibberellin biosynthesis. KNAT5 promoter activity showed cell-type specific pattern along longitudinal root axis, primarily in the epidermis of the distal end of primary root elongation zone.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
42.599.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
31.999.7GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
26.999.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
24.999.6GSM128661Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.143e-26121At1g64530842761RWP-RK domain-containing proteinF:transcription factor activity;P:unknown;C:unknown;PMOC.G.S.X.
0.021e-1069At4g38340829991RWP-RK domain-containing proteinF:transcription factor activity;P:regulation of transcription;C:unknown;POFBC.G.S.X.
0.019e-240At2g41680818766NTRC (NADPH-DEPENDENT THIOREDOXIN REDUCTASE C)Encodes a NADPH thioredoxin reductase involved in chloroplast protection against oxidative damage.C.G.S.X.
0.014e-138At5g41360834138XPB2Encodes XPB2, a DNA repair protein and transcription factor. Arabidopsis thaliana has duplicated XPB gene (AtXPB1 and AtXPB2, with high similarity to each other). XPB proteins are involved in both DNA repair and transcription, they are component of the transcription factor IIH (TFIIH) and are responsible for DNA helicase activity during nucleotide (nt) excision repair (NER). Complementation assays in yeast rad25 mutant strains suggest the involvement of AtXPB2 in DNA repair. Although both genes are expressed in a constitutive manner during the plant life cycle, Northern blot analyses suggest that light modulates the expression level of both XPB copies.C.G.S.X.
0.014e-138At2g01505814679CLE16 (CLAVATA3/ESR-RELATED 16)Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon.C.G.S.X.
0.011e+036At5g15300831382pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBC.G.S.X.
0.011e+036At5g05260830408CYP79A2 (CYTOCHROME P450 79A2)Encodes cytochrome P450 CYP79A2.C.G.S.X.
0.011e+036At5g09730830833BXL3 (beta-xylosidase 3)encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members.C.G.S.X.
0.011e+036At3g42060823174myosin heavy chain-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;PFC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.035e-448Glycine maxGmaAffx.29434.1.S1_atBG508620--8e-1At1g64530RWP-RK domain-containing proteinC.G.S.X.
0.027e-446Hordeum vulgareContig13988_atContig13988--5e-4At4g24020NLP7 (NIN LIKE PROTEIN 7)C.G.S.X.
0.098e-757Oryza sativaOs01g0236700AK067319.1--3e-17At1g64530RWP-RK domain-containing proteinC.G.S.X.
0.075e-448Populus trichocarpaPtp.1008.1.A1_atCV242659hypothetical protein-8e-5At4g24020NLP7 (NIN LIKE PROTEIN 7)C.G.S.X.
0.053e-552Triticum aestivumTaAffx.56523.1.S1_atCA649888--4e-6At4g24020NLP7 (NIN LIKE PROTEIN 7)C.G.S.X.
0.012e+034Vitis vinifera1621951_atBQ795175hypothetical protein LOC100252259-3e-1At5g38050unknown proteinC.G.S.X.
0.013e+034Zea maysZm.2848.1.S1_atBE639815--5e-1At1g19060unknown proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009414A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water.
XGO:0010118The process of opening or closing of stomata, which is directly related to the stomatal conductance (measuring rate of passage of either water vapor or carbon dioxide (CO2) through stomata).
XGO:0010167A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitrate stimulus.
XGO:0042128The uptake, from the environment, of nitrates, inorganic or organic salts and esters of nitric acid and the subsequent reduction of nitrate ion to other, less highly oxidized, inorganic nitrogenous substances.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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