Gene omics information

Query gene ID At4g23990
Gene name ATCSLG3
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2217.5At4g23990828499ATCSLG3encodes a protein similar to cellulose synthaseS.X.H.G.
0.4050.8At4g16750827379DRE-binding transcription factor, putativeencodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.S.X.H.G.
0.2014.4At3g57680824937peptidase S41 family proteinF:serine-type peptidase activity, protein binding;P:proteolysis, intracellular signaling cascade;C:chloroplast thylakoid lumen, membrane;OBPMS.X.H.G.
0.071.9At1g28230839717PUP1 (PURINE PERMEASE 1)Encodes a transporter that transports purines,cytokinins and other adenine derivatives. Expressed in the leaf hydathodes where it may be involved in re-uptake of cytokinins during guttation.S.X.H.G.
0.030.6At2g32290817789BAM6 (BETA-AMYLASE 6)F:cation binding, beta-amylase activity, catalytic activity;P:cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process;C:chloroplast;PBOS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
181.0100.0E-ATMX-32-raw-cel-1562974621
133.299.9E-ATMX-32-raw-cel-1562974409
107.399.9E-ATMX-32-raw-cel-1562974681
80.299.9E-ATMX-32-raw-cel-1562974595
78.599.9GSM269815T6 leaf-drought-rep1GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
73.399.9GSM269822T6 leaf-well watered-rep2GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
71.199.9GSM269817T8 leaf-drought-rep1GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
70.999.9GSM269833T8 leaf-drought-rep3GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
62.399.8GSM269831T6 leaf-drought-rep3GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
57.199.8E-ATMX-32-raw-cel-1562974527
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.7901622At4g24010828501ATCSLG1encodes a protein similar to cellulose synthaseC.G.S.X.
0.760878At4g24000828500ATCSLG2encodes a protein similar to cellulose synthaseC.G.S.X.
0.013e-138At5g57090835813EIR1 (ETHYLENE INSENSITIVE ROOT 1)Encodes an auxin efflux carrier that is similar to bacterial membrane transporters. Root-specific role in the transport of auxin. Acts downstream of CTR1 and ethylene biosynthesis, in the same pathway as EIN2 and AUX1, and independent from EIN3 and EIN5/AIN1 pathway. In the root, the protein localizes apically in epidermal and lateral root cap cells and predominantly basally in cortical cells. Functions may be regulated by phosphorylation status. EIR1 expression is induced by brassinolide treatment in the brassinosteroid-insensitive br1 mutant. Gravistimulation resulted in asymmetric PIN2 distribution, with more protein degraded at the upper side of the gravistimulated root. Protein turnover is affected by the proteasome and by endosomal cycling. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. Membrane sterol composition is essential for the acquisition of PIN2 polarity.C.G.S.X.
0.013e-138At3g58800825049unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PVOC.G.S.X.
0.013e-138At1g55850842035ATCSLE1encodes a protein similar to cellulose synthaseC.G.S.X.
0.011e+036At5g64790836600glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PFBOC.G.S.X.
0.011e+036At4g29070829028-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.011e+036At4g15130827179catalytic/ choline-phosphate cytidylyltransferase/ nucleotidyltransferaseF:choline-phosphate cytidylyltransferase activity, catalytic activity, nucleotidyltransferase activity;P:response to cold, biosynthetic process;C:unknown;OMBFPAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.014e-138Glycine maxGmaAffx.49842.1.S1_atBG237217--2e-5At4g24000ATCSLG2C.G.S.X.
0.012e+034Hordeum vulgareHT08A01u_x_atHT08A01u--4e+0At4g30340ATDGK7 (Diacylglycerol kinase 7)C.G.S.X.
0.024e-242Oryza sativaOs09g0478100AK103810.1-Cellulose synthase family protein7e-2At1g55850ATCSLE1C.G.S.X.
0.102e-1275Populus trichocarpaPtpAffx.86652.1.S1_atDN486460hypothetical protein-5e-13At4g23990ATCSLG3C.G.S.X.
0.011e+036Triticum aestivumTaAffx.42053.1.S1_atBQ605668--1e+0At5g01500mitochondrial substrate carrier family proteinC.G.S.X.
0.015e+032Vitis vinifera1620793_atCB349229hypothetical protein LOC100254083-3e-7At1g10210ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1)C.G.S.X.
0.015e-136Zea maysZm.12018.1.A1_atBM382690--2e+0At1g72540protein kinase, putativeC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0000271The chemical reactions and pathways resulting in the formation of polysaccharides, polymers of more than 10 monosaccharide residues joined by glycosidic linkages.
LGO:0030244The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00021Link to KaPPA-View 4Cellulose biosynthesis
00359Link to KaPPA-View 4Glucosyltransferase



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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