Gene omics information

Query gene ID At4g23980
Gene name ARF9 (AUXIN RESPONSE FACTOR 9)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At4g23980828498ARF9 (AUXIN RESPONSE FACTOR 9)Encodes auxin response factor 9 (ARF9).S.X.H.G.
0.3338.1At2g17150816220RWP-RK domain-containing proteinF:transcription factor activity;P:unknown;C:unknown;POFMS.X.H.G.
0.2930.3At2g33440817909splicing factor family proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:cellular_component unknown;MPFOS.X.H.G.
0.040.9At2g44950819104HUB1 (HISTONE MONO-UBIQUITINATION 1)The gene encodes one of two orthologous E3 ubiquitin ligases in Arabidopsis that are involved in monoubiquitination of histone H2B.S.X.H.G.
0.010.2At1g79030844244DNAJ heat shock N-terminal domain-containing protein / S-locus protein, putativeF:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAVS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
154.299.9GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
120.999.9GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
112.799.9GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
111.299.9GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
99.599.9GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
91.399.9GSM260883Yap_A2-AMF_Rep2GSE10323Testing Arabidopsis for the presence of arbuscular mycorrhizal signalling pathways
84.699.9GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
77.899.9GSM260882Yap_A1-AMF_Rep2GSE10323Testing Arabidopsis for the presence of arbuscular mycorrhizal signalling pathways
76.199.9GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
70.199.9GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.092e-1481At1g34310840331ARF12 (AUXIN RESPONSE FACTOR 12)F:transcription factor activity;P:response to hormone stimulus, regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;PMC.G.S.X.
0.177e-1479At1g35540840450ARF14 (AUXIN RESPONSE FACTOR 14)F:transcription factor activity;P:regulation of transcription;C:nucleus;PBC.G.S.X.
0.127e-1169At1g34390840341ARF22 (AUXIN RESPONSE FACTOR 22)F:transcription factor activity;P:regulation of transcription;C:nucleus;PC.G.S.X.
0.064e-963At1g35520840447ARF15 (AUXIN RESPONSE FACTOR 15)F:transcription factor activity;P:regulation of transcription;C:nucleus;PC.G.S.X.
0.107e-859At2g46530819264ARF11 (AUXIN RESPONSE FACTOR 11)F:transcription factor activity;P:response to hormone stimulus, regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;POMFC.G.S.X.
0.123e-757At1g34410840344ARF21 (AUXIN RESPONSE FACTOR 21)F:transcription factor activity;P:regulation of transcription;C:nucleus;PC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.146e-1583Glycine maxGmaAffx.86514.1.S1_atBG790017--1e-15At4g23980ARF9 (AUXIN RESPONSE FACTOR 9)C.G.S.X.
0.012e+034Hordeum vulgarerbags11h24_s_atrbags11h24--3e+0At4g33985unknown proteinC.G.S.X.
0.071e-1069Oryza sativaOs02g0557200AK070026.1-Auxin response factor 11e-22At1g59750ARF1 (AUXIN RESPONSE FACTOR 1)C.G.S.X.
0.193e-1791Populus trichocarpaPtpAffx.202273.1.S1_atpmrna4548--4e-37At3g61830ARF18 (AUXIN RESPONSE FACTOR 18)C.G.S.X.
0.041e-346Triticum aestivumTa.15664.1.S1_atCA486187--1e-7At3g61830ARF18 (AUXIN RESPONSE FACTOR 18)C.G.S.X.
0.132e-2099Vitis vinifera1616225_atCB972698hypothetical protein LOC100265555-7e-12At3g61830ARF18 (AUXIN RESPONSE FACTOR 18)C.G.S.X.
0.052e-344Zea maysZm.4043.1.S1_atAW091252--3e-10At1g59750ARF1 (AUXIN RESPONSE FACTOR 1)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
SGO:0006355Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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