CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g23820

Gene name glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At4g23820 828482 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA S.X. H.G.
0.57 73.8 At3g20820 821630 leucine-rich repeat family protein F:protein binding;P:signal transduction, defense response;C:apoplast, cell wall, chloroplast, membrane;PMOBFA S.X. H.G.
0.50 65.3 At3g43720 823481 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to membrane, membrane;P S.X. H.G.
0.50 65.3 At3g61550 825328 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV S.X. H.G.
0.23 19.3 At3g16370 820884 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:apoplast;PBFOM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
14.9 99.4 GSM131216 AtGen_D-26_1-FS_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
11.9 99.3 E-MEXP-265-raw-cel-414619318
11.8 99.3 E-MEXP-265-raw-cel-414619106
11.7 99.3 Millenaar_A3_LL_Rep1_ATH1
11.7 99.3 GSM226269 WT(Ler)_Dark_replicate3 GSE8951 A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks
11.6 99.3 E-MEXP-265-raw-cel-414619001
11.5 99.3 E-MEXP-1246-raw-cel-1504120261
11.4 99.3 GSM131194 AtGen_D-28_2-RS_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
11.0 99.2 GSM131184 AtGen_D-16_1-WS_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
10.8 99.2 GSM131177 AtGen_D-9_1-DS_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.28 2e-22 107 At5g41870 834192 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA C.G. S.X.
0.03 1e-5 52 At3g62110 825384 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:response to cyclopentenone, carbohydrate metabolic process;C:vacuole;FPBOMAV C.G. S.X.
0.06 4e-5 50 At3g48950 824056 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA C.G. S.X.
0.04 7e-4 46 At4g33440 829481 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAV C.G. S.X.
0.05 7e-4 46 At1g19170 838500 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:mitochondrion;FPBOMA C.G. S.X.
0.04 1e-2 42 At3g16850 820938 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:vacuole, plant-type cell wall;PBFOMA C.G. S.X.
0.02 2e-1 38 At4g17940 827519 binding F:binding;P:biological_process unknown;C:unknown;PBOMA C.G. S.X.
0.01 7e-1 36 At4g18670 827601 protein binding / structural constituent of cell wall F:structural constituent of cell wall, protein binding;P:unknown;C:endomembrane system;MBPFOVA C.G. S.X.
0.03 7e-1 36 At3g42950 823351 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 1e-2 42 Glycine max Gma.7587.1.S1_at CD392205 - - 2e-15 At5g41870 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.11 4e-13 75 Hordeum vulgare Contig12893_at Contig12893 - - 9e-13 At4g23820 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.11 3e-23 111 Oryza sativa Os01g0618900 AK058453.1 - Glycoside hydrolase, family 28 protein 2e-23 At4g23820 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.32 2e-38 161 Populus trichocarpa PtpAffx.5923.1.S1_at CV229264 hypothetical protein - 2e-38 At4g23820 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.11 2e-16 87 Triticum aestivum TaAffx.85286.1.S1_at CA624020 - - 8e-17 At4g23820 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.07 9e-16 83 Vitis vinifera 1621225_at CB974537 hypothetical LOC100250089 - 1e-15 At4g23820 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.11 4e-19 95 Zea mays Zm.7001.1.A1_at CO526482 hypothetical protein LOC100273574 - 1e-18 At4g23820 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00400 Homogalacturonan degradation
00412 Glycoside Hydrolase
00442 Rhamnogalacturonan II degradation

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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